2p7r

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[[Image:2p7r.jpg|left|200px]]
 
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==Cyclic pentapeptide which inhibits Hantavirus==
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The line below this paragraph, containing "STRUCTURE_2p7r", creates the "Structure Box" on the page.
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<StructureSection load='2p7r' size='340' side='right'caption='[[2p7r]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2p7r]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P7R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P7R FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 11 models</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p7r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p7r OCA], [https://pdbe.org/2p7r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p7r RCSB], [https://www.ebi.ac.uk/pdbsum/2p7r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p7r ProSAT]</span></td></tr>
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{{STRUCTURE_2p7r| PDB=2p7r | SCENE= }}
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</table>
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<div style="background-color:#fffaf0;">
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'''Cyclic pentapeptide which inhibits Hantavirus'''
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== Publication Abstract from PubMed ==
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==Overview==
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Hantavirus-induced diseases such as hantavirus cardiopulmonary syndrome and hemorrhagic fever with renal syndrome are a global health concern. Hantavirus cardiopulmonary syndrome caused by Sin Nombre virus lacks specific therapy and its high mortality makes Sin Nombre virus a potential bioweapon agent. Sin Nombre virus entry into susceptible cells requires expression of alpha(v)beta(3) integrin. We recently reported the sequence of a cyclic nonapeptide that inhibited Sin Nombre virus entry into Vero E6 cells at a level comparable to ReoPro, a Fab fragment of the anti-beta(3) antibody c7E3. Here, we refine the parental peptide, cyclo-[CPFVKTQLC], using alanine scanning and amino acid deletions, by optimizing for viral inhibition. The IC(50) of the resulting peptide, cyclo-[CPFVC], was 267 microM compared with 263 microM for the parental peptide. The solution structure of cyclo-[CPFVC] was determined by two-dimensional nuclear magnetic resonance spectroscopy, revealing the Phe ring in an extended conformation stacked against the Pro ring and containing a beta-turn encompassing Val-4 through Cys-1. As an initial step in identifying interactions between cyclo-[CPFVC] and its target cellular receptor, the refined peptide structure was docked into the ReoPro binding site of integrin beta(3). This structure will provide the basis for designing more potent peptidomimetic therapeutics to prevent Sin Nombre virus entry and treat hantavirus cardiopulmonary syndrome.
Hantavirus-induced diseases such as hantavirus cardiopulmonary syndrome and hemorrhagic fever with renal syndrome are a global health concern. Hantavirus cardiopulmonary syndrome caused by Sin Nombre virus lacks specific therapy and its high mortality makes Sin Nombre virus a potential bioweapon agent. Sin Nombre virus entry into susceptible cells requires expression of alpha(v)beta(3) integrin. We recently reported the sequence of a cyclic nonapeptide that inhibited Sin Nombre virus entry into Vero E6 cells at a level comparable to ReoPro, a Fab fragment of the anti-beta(3) antibody c7E3. Here, we refine the parental peptide, cyclo-[CPFVKTQLC], using alanine scanning and amino acid deletions, by optimizing for viral inhibition. The IC(50) of the resulting peptide, cyclo-[CPFVC], was 267 microM compared with 263 microM for the parental peptide. The solution structure of cyclo-[CPFVC] was determined by two-dimensional nuclear magnetic resonance spectroscopy, revealing the Phe ring in an extended conformation stacked against the Pro ring and containing a beta-turn encompassing Val-4 through Cys-1. As an initial step in identifying interactions between cyclo-[CPFVC] and its target cellular receptor, the refined peptide structure was docked into the ReoPro binding site of integrin beta(3). This structure will provide the basis for designing more potent peptidomimetic therapeutics to prevent Sin Nombre virus entry and treat hantavirus cardiopulmonary syndrome.
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==About this Structure==
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Characterization and NMR solution structure of a novel cyclic pentapeptide inhibitor of pathogenic hantaviruses.,Hall PR, Malone L, Sillerud LO, Ye C, Hjelle BL, Larson RS Chem Biol Drug Des. 2007 Mar;69(3):180-90. PMID:17441904<ref>PMID:17441904</ref>
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P7R OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Characterization and NMR solution structure of a novel cyclic pentapeptide inhibitor of pathogenic hantaviruses., Hall PR, Malone L, Sillerud LO, Ye C, Hjelle BL, Larson RS, Chem Biol Drug Des. 2007 Mar;69(3):180-90. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17441904 17441904]
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</div>
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[[Category: Hall, P R.]]
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<div class="pdbe-citations 2p7r" style="background-color:#fffaf0;"></div>
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[[Category: Hjelle, B.]]
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== References ==
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[[Category: Larson, R S.]]
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<references/>
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[[Category: Malone, L.]]
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__TOC__
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[[Category: Sillerud, L O.]]
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</StructureSection>
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[[Category: Ye, C.]]
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[[Category: Large Structures]]
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[[Category: Biosynthetic protein]]
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[[Category: Hall PR]]
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[[Category: Cyclic pentapeptide]]
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[[Category: Hjelle B]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 12:33:52 2008''
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[[Category: Larson RS]]
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[[Category: Malone L]]
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[[Category: Sillerud LO]]
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[[Category: Ye C]]

Current revision

Cyclic pentapeptide which inhibits Hantavirus

PDB ID 2p7r

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