This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pbf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:58, 30 August 2023) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pbf.gif|left|200px]]
 
-
<!--
+
==Crystal structure of a putative protein-L-isoaspartate O-methyltransferase beta-aspartate methyltransferase (PCMT) from Plasmodium falciparum in complex with S-adenosyl-L-homocysteine==
-
The line below this paragraph, containing "STRUCTURE_2pbf", creates the "Structure Box" on the page.
+
<StructureSection load='2pbf' size='340' side='right'caption='[[2pbf]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pbf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Plasmodium_falciparum_3D7 Plasmodium falciparum 3D7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PBF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-
{{STRUCTURE_2pbf| PDB=2pbf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pbf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pbf OCA], [https://pdbe.org/2pbf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pbf RCSB], [https://www.ebi.ac.uk/pdbsum/2pbf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pbf ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of a putative protein-L-isoaspartate O-methyltransferase beta-aspartate methyltransferase (PCMT) from Plasmodium falciparum in complex with S-adenosyl-L-homocysteine'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2PBF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Plasmodium_falciparum_3d7 Plasmodium falciparum 3d7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PBF OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pb/2pbf_consurf.spt"</scriptWhenChecked>
-
[[Category: Plasmodium falciparum 3d7]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Arrowsmith, C H.]]
+
</jmolCheckbox>
-
[[Category: Bochkarev, A.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pbf ConSurf].
-
[[Category: Edwards, A M.]]
+
<div style="clear:both"></div>
-
[[Category: Hassanali, A.]]
+
__TOC__
-
[[Category: Hui, R.]]
+
</StructureSection>
-
[[Category: Kozieradzki, I.]]
+
[[Category: Large Structures]]
-
[[Category: Lew, J.]]
+
[[Category: Plasmodium falciparum 3D7]]
-
[[Category: Lin, L.]]
+
[[Category: Arrowsmith CH]]
-
[[Category: Qiu, W.]]
+
[[Category: Bochkarev A]]
-
[[Category: Ravichandran, M.]]
+
[[Category: Edwards AM]]
-
[[Category: SGC, Structural Genomics Consortium.]]
+
[[Category: Hassanali A]]
-
[[Category: Sundstrom, M.]]
+
[[Category: Hui R]]
-
[[Category: Vedadi, M.]]
+
[[Category: Kozieradzki I]]
-
[[Category: Wasney, G.]]
+
[[Category: Lew J]]
-
[[Category: Weigelt, J.]]
+
[[Category: Lin L]]
-
[[Category: Wernimont, A K.]]
+
[[Category: Qiu W]]
-
[[Category: Zhao, Y.]]
+
[[Category: Ravichandran M]]
-
[[Category: Isoaspartyl formation]]
+
[[Category: Sundstrom M]]
-
[[Category: Methyltransferase]]
+
[[Category: Vedadi M]]
-
[[Category: P. falciparum]]
+
[[Category: Wasney G]]
-
[[Category: Protein repair]]
+
[[Category: Weigelt J]]
-
[[Category: Sgc]]
+
[[Category: Wernimont AK]]
-
[[Category: Structural genomics consortium]]
+
[[Category: Zhao Y]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 12:46:30 2008''
+

Current revision

Crystal structure of a putative protein-L-isoaspartate O-methyltransferase beta-aspartate methyltransferase (PCMT) from Plasmodium falciparum in complex with S-adenosyl-L-homocysteine

PDB ID 2pbf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pbf"
Personal tools