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2pcg

From Proteopedia

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[[Image:2pcg.jpg|left|200px]]
 
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==Crystal structure of PH0725 from Pyrococcus horikoshii OT3==
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The line below this paragraph, containing "STRUCTURE_2pcg", creates the "Structure Box" on the page.
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<StructureSection load='2pcg' size='340' side='right'caption='[[2pcg]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2pcg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PCG FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
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{{STRUCTURE_2pcg| PDB=2pcg | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pcg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pcg OCA], [https://pdbe.org/2pcg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pcg RCSB], [https://www.ebi.ac.uk/pdbsum/2pcg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pcg ProSAT], [https://www.topsan.org/Proteins/RSGI/2pcg TOPSAN]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/DPHB_PYRHO DPHB_PYRHO] S-adenosyl-L-methionine-dependent methyltransferase that catalyzes the trimethylation of the amino group of the modified target histidine residue in translation elongation factor 2 (EF-2), to form an intermediate called diphthine. The three successive methylation reactions represent the second step of diphthamide biosynthesis.<ref>PMID:20873788</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pc/2pcg_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pcg ConSurf].
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<div style="clear:both"></div>
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'''Crystal structure of PH0725 from Pyrococcus horikoshii OT3'''
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==See Also==
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*[[Diphthine synthase|Diphthine synthase]]
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== References ==
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==About this Structure==
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<references/>
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2PCG is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PCG OCA].
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__TOC__
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[[Category: Diphthine synthase]]
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Pyrococcus horikoshii]]
[[Category: Pyrococcus horikoshii]]
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[[Category: Single protein]]
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[[Category: Kageyama Y]]
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[[Category: Kageyama, Y.]]
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[[Category: Kunishima N]]
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[[Category: Kunishima, N.]]
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[[Category: Matsuura Y]]
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[[Category: Matsuura, Y.]]
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[[Category: Sugahara M]]
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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[[Category: Taketa M]]
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[[Category: Sugahara, M.]]
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[[Category: Taketa, M.]]
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[[Category: Methyltransferase]]
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[[Category: National project on protein structural and functional analyse]]
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[[Category: Nppsfa]]
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[[Category: Pyrococcus horikoshii ot3]]
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[[Category: Riken structural genomics/proteomics initiative]]
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[[Category: Rsgi]]
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[[Category: S-adenosyl-l-methionine]]
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[[Category: Structural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 12:50:25 2008''
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Current revision

Crystal structure of PH0725 from Pyrococcus horikoshii OT3

PDB ID 2pcg

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