2pgx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:18, 21 November 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pgx.gif|left|200px]]
 
-
<!--
+
==Crystal structure of UPF0341 protein yhiQ from E. coli, Northeast Structural Genomics Target ER585==
-
The line below this paragraph, containing "STRUCTURE_2pgx", creates the "Structure Box" on the page.
+
<StructureSection load='2pgx' size='340' side='right'caption='[[2pgx]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pgx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PGX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PGX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2pgx| PDB=2pgx | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pgx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pgx OCA], [https://pdbe.org/2pgx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pgx RCSB], [https://www.ebi.ac.uk/pdbsum/2pgx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pgx ProSAT], [https://www.topsan.org/Proteins/NESGC/2pgx TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of UPF0341 protein yhiQ from E. coli, Northeast Structural Genomics Target ER585'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
2PGX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_o157:h7 Escherichia coli o157:h7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PGX OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pg/2pgx_consurf.spt"</scriptWhenChecked>
-
[[Category: Escherichia coli o157:h7]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Single protein]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Acton, T B.]]
+
</jmolCheckbox>
-
[[Category: Baran, M C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pgx ConSurf].
-
[[Category: Fang, Y.]]
+
<div style="clear:both"></div>
-
[[Category: Forouhar, F.]]
+
__TOC__
-
[[Category: Hunt, J F.]]
+
</StructureSection>
-
[[Category: Janjua, H.]]
+
[[Category: Escherichia coli O157:H7]]
-
[[Category: Liu, J.]]
+
[[Category: Large Structures]]
-
[[Category: Montelione, G T.]]
+
[[Category: Acton TB]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Baran MC]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Fang Y]]
-
[[Category: Su, M.]]
+
[[Category: Forouhar F]]
-
[[Category: Tong, L.]]
+
[[Category: Hunt JF]]
-
[[Category: Xiao, R.]]
+
[[Category: Janjua H]]
-
[[Category: Alpha-beta protein]]
+
[[Category: Liu J]]
-
[[Category: Nesg]]
+
[[Category: Montelione GT]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: Seetharaman J]]
-
[[Category: Protein structure initiative]]
+
[[Category: Su M]]
-
[[Category: Psi-2]]
+
[[Category: Tong L]]
-
[[Category: Structural genomic]]
+
[[Category: Xiao R]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 13:05:04 2008''
+

Current revision

Crystal structure of UPF0341 protein yhiQ from E. coli, Northeast Structural Genomics Target ER585

PDB ID 2pgx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pgx"
Personal tools