2ph5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:24, 17 June 2021) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2ph5.gif|left|200px]]
 
-
<!--
+
==Crystal structure of the homospermidine synthase hss from Legionella pneumophila in complex with NAD, Northeast Structural Genomics Target LgR54==
-
The line below this paragraph, containing "STRUCTURE_2ph5", creates the "Structure Box" on the page.
+
<StructureSection load='2ph5' size='340' side='right'caption='[[2ph5]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2ph5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Legph Legph]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PH5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PH5 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2ph5| PDB=2ph5 | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">hss, lpg2495 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 LEGPH])</td></tr>
-
 
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Homospermidine_synthase Homospermidine synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.44 2.5.1.44] </span></td></tr>
-
'''Crystal structure of the homospermidine synthase hss from Legionella pneumophila in complex with NAD, Northeast Structural Genomics Target LgR54'''
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ph5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ph5 OCA], [https://pdbe.org/2ph5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ph5 RCSB], [https://www.ebi.ac.uk/pdbsum/2ph5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ph5 ProSAT], [https://www.topsan.org/Proteins/NESGC/2ph5 TOPSAN]</span></td></tr>
-
 
+
</table>
-
 
+
== Evolutionary Conservation ==
-
==About this Structure==
+
[[Image:Consurf_key_small.gif|200px|right]]
-
2PH5 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila Legionella pneumophila subsp. pneumophila]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PH5 OCA].
+
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ph/2ph5_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ph5 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
[[Category: Homospermidine synthase]]
[[Category: Homospermidine synthase]]
-
[[Category: Legionella pneumophila subsp. pneumophila]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Legph]]
-
[[Category: Acton, T B.]]
+
[[Category: Acton, T B]]
-
[[Category: Baran, M C.]]
+
[[Category: Baran, M C]]
-
[[Category: Cunningham, K.]]
+
[[Category: Cunningham, K]]
-
[[Category: Fang, Y.]]
+
[[Category: Fang, Y]]
-
[[Category: Forouhar, F.]]
+
[[Category: Forouhar, F]]
-
[[Category: Hunt, J F.]]
+
[[Category: Hunt, J F]]
-
[[Category: Hussain, M.]]
+
[[Category: Hussain, M]]
-
[[Category: Janjua, H.]]
+
[[Category: Janjua, H]]
-
[[Category: Liu, J.]]
+
[[Category: Liu, J]]
-
[[Category: Ma, L-C.]]
+
[[Category: Ma, L C]]
-
[[Category: Montelione, G T.]]
+
[[Category: Montelione, G T]]
-
[[Category: NESG, Northeast Structural Genomics Consortium.]]
+
[[Category: Structural genomic]]
-
[[Category: Owens, L.]]
+
[[Category: Owens, L]]
-
[[Category: Seetharaman, J.]]
+
[[Category: Seetharaman, J]]
-
[[Category: Tong, L.]]
+
[[Category: Tong, L]]
-
[[Category: Xiao, R.]]
+
[[Category: Xiao, R]]
[[Category: Alpha-beta protein]]
[[Category: Alpha-beta protein]]
[[Category: Nesg]]
[[Category: Nesg]]
-
[[Category: Northeast structural genomics consortium]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Protein structure initiative]]
+
[[Category: Transferase]]
-
[[Category: Psi-2]]
+
-
[[Category: Structural genomic]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 13:06:04 2008''
+

Current revision

Crystal structure of the homospermidine synthase hss from Legionella pneumophila in complex with NAD, Northeast Structural Genomics Target LgR54

PDB ID 2ph5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools