1t3f

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(New page: 200px<br /> <applet load="1t3f" size="450" color="white" frame="true" align="right" spinBox="true" caption="1t3f, resolution 2.00&Aring;" /> '''THREE DIMENSIONAL S...)
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[[Image:1t3f.gif|left|200px]]<br />
 
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<applet load="1t3f" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1t3f, resolution 2.00&Aring;" />
 
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'''THREE DIMENSIONAL STRUCTURE OF A HUMANIZED ANTI-IFN-GAMMA FAB (HuZAF) IN P21 21 21 SPACE GROUP'''<br />
 
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==Overview==
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==THREE DIMENSIONAL STRUCTURE OF A HUMANIZED ANTI-IFN-GAMMA FAB (HuZAF) IN P21 21 21 SPACE GROUP==
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Three-dimensional structures were determined for two crystal forms, (orthorhombic P2(1)2(1)2(1) and monoclinic C2) of the Fab from the, humanized version of a murine monoclonal antibody (AF2) that possesses, binding and potent neutralizing activity against human interferon gamma, (IFN-gamma). This humanized antibody (HuZAF; USAN name fontolizumab) is, currently in phase II clinical trials for the treatment of Crohn's, disease. HuZAF exhibits binding and IFN-gamma neutralizing capacities that, closely approximate those of the original antibody. It is shown that, HuZAF, whose VH domain was designed using a best-sequence-fit approach, is, closer structurally to its mouse precursor than is a version whose VH was, constructed using a human sequence with lower homology to the original, mouse sequence. This work thus offers direct structural evidence in, support of the best-sequence-fit approach and adds to previous results of, biological and biochemical evaluations of distinctly engineered antibodies, that also favored the use of a best-sequence-fit strategy. A second, crystal type appeared during attempts to crystallize the Fab-IFN-gamma, complex. The antibody-antigen complex that existed in solution dissociated, in the crystallization mixture. A conformationally altered but unliganded, HuZAF protein crystallized in a different space group (C2), with two Fab, molecules in the asymmetric unit. In this crystal lattice, no space was, available for accommodating the IFN-gamma antigen. Thus, there are, currently three slightly different structures of the HuZAF Fab.
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<StructureSection load='1t3f' size='340' side='right'caption='[[1t3f]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1t3f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1T3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1T3F FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1t3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1t3f OCA], [https://pdbe.org/1t3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1t3f RCSB], [https://www.ebi.ac.uk/pdbsum/1t3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1t3f ProSAT]</span></td></tr>
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</table>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/t3/1t3f_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1t3f ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Three-dimensional structures were determined for two crystal forms (orthorhombic P2(1)2(1)2(1) and monoclinic C2) of the Fab from the humanized version of a murine monoclonal antibody (AF2) that possesses binding and potent neutralizing activity against human interferon gamma (IFN-gamma). This humanized antibody (HuZAF; USAN name fontolizumab) is currently in phase II clinical trials for the treatment of Crohn's disease. HuZAF exhibits binding and IFN-gamma neutralizing capacities that closely approximate those of the original antibody. It is shown that HuZAF, whose VH domain was designed using a best-sequence-fit approach, is closer structurally to its mouse precursor than is a version whose VH was constructed using a human sequence with lower homology to the original mouse sequence. This work thus offers direct structural evidence in support of the best-sequence-fit approach and adds to previous results of biological and biochemical evaluations of distinctly engineered antibodies that also favored the use of a best-sequence-fit strategy. A second crystal type appeared during attempts to crystallize the Fab-IFN-gamma complex. The antibody-antigen complex that existed in solution dissociated in the crystallization mixture. A conformationally altered but unliganded HuZAF protein crystallized in a different space group (C2), with two Fab molecules in the asymmetric unit. In this crystal lattice, no space was available for accommodating the IFN-gamma antigen. Thus, there are currently three slightly different structures of the HuZAF Fab.
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==About this Structure==
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Three-dimensional structures of a humanized anti-IFN-gamma Fab (HuZAF) in two crystal forms.,Bourne PC, Terzyan SS, Cloud G, Landolfi NF, Vasquez M, Edmundson AB Acta Crystallogr D Biol Crystallogr. 2004 Oct;60(Pt 10):1761-9. Epub 2004, Sep 23. PMID:15388922<ref>PMID:15388922</ref>
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1T3F is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1T3F OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Three-dimensional structures of a humanized anti-IFN-gamma Fab (HuZAF) in two crystal forms., Bourne PC, Terzyan SS, Cloud G, Landolfi NF, Vasquez M, Edmundson AB, Acta Crystallogr D Biol Crystallogr. 2004 Oct;60(Pt 10):1761-9. Epub 2004, Sep 23. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=15388922 15388922]
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</div>
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[[Category: Homo sapiens]]
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<div class="pdbe-citations 1t3f" style="background-color:#fffaf0;"></div>
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[[Category: Protein complex]]
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[[Category: Bourne, P.C.]]
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[[Category: Cloud, G.]]
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[[Category: Edmundson, A.B.]]
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[[Category: Landolfi, N.F.]]
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[[Category: Terzyan, S.S.]]
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[[Category: Vasquez, M.]]
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[[Category: antibody engineering]]
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[[Category: fab]]
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[[Category: gamma-interferon]]
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[[Category: humanized and chimeric antibody]]
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[[Category: immune system]]
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[[Category: x-ray structure]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 18 09:42:46 2007''
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==See Also==
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*[[Monoclonal Antibodies 3D structures|Monoclonal Antibodies 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Bourne PC]]
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[[Category: Cloud G]]
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[[Category: Edmundson AB]]
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[[Category: Landolfi NF]]
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[[Category: Terzyan SS]]
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[[Category: Vasquez M]]

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THREE DIMENSIONAL STRUCTURE OF A HUMANIZED ANTI-IFN-GAMMA FAB (HuZAF) IN P21 21 21 SPACE GROUP

PDB ID 1t3f

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