2i69

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(New page: 200px<br /> <applet load="2i69" size="450" color="white" frame="true" align="right" spinBox="true" caption="2i69, resolution 3.11&Aring;" /> '''Crystal structure o...)
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[[Image:2i69.gif|left|200px]]<br />
 
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<applet load="2i69" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="2i69, resolution 3.11&Aring;" />
 
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'''Crystal structure of the West Nile virus envelope glycoprotein'''<br />
 
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==Overview==
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==Crystal structure of the West Nile virus envelope glycoprotein==
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West Nile virus, a member of the Flavivirus genus, causes fever that can, progress to life-threatening encephalitis. The major envelope, glycoprotein, E, of these viruses mediates viral attachment and entry by, membrane fusion. We have determined the crystal structure of a soluble, fragment of West Nile virus E. The structure adopts the same overall fold, as that of the E proteins from dengue and tick-borne encephalitis viruses., The conformation of domain II is different from that in other prefusion E, structures, however, and resembles the conformation of domain II in, postfusion E structures. The epitopes of neutralizing West Nile, virus-specific antibodies map to a region of domain III that is exposed on, the viral surface and has been implicated in receptor binding. In, contrast, we show that certain recombinant therapeutic antibodies, which, cross-neutralize West Nile and dengue viruses, bind a peptide from domain, I that is exposed only during the membrane fusion transition. By revealing, the details of the molecular landscape of the West Nile virus surface, our, structure will assist the design of antiviral vaccines and therapeutics.
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<StructureSection load='2i69' size='340' side='right'caption='[[2i69]], [[Resolution|resolution]] 3.11&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[2i69]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/West_Nile_virus West Nile virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I69 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I69 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.11&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUL:BETA-L-FUCOSE'>FUL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i69 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i69 OCA], [https://pdbe.org/2i69 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i69 RCSB], [https://www.ebi.ac.uk/pdbsum/2i69 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i69 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q80QJ9_WNV Q80QJ9_WNV]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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West Nile virus, a member of the Flavivirus genus, causes fever that can progress to life-threatening encephalitis. The major envelope glycoprotein, E, of these viruses mediates viral attachment and entry by membrane fusion. We have determined the crystal structure of a soluble fragment of West Nile virus E. The structure adopts the same overall fold as that of the E proteins from dengue and tick-borne encephalitis viruses. The conformation of domain II is different from that in other prefusion E structures, however, and resembles the conformation of domain II in postfusion E structures. The epitopes of neutralizing West Nile virus-specific antibodies map to a region of domain III that is exposed on the viral surface and has been implicated in receptor binding. In contrast, we show that certain recombinant therapeutic antibodies, which cross-neutralize West Nile and dengue viruses, bind a peptide from domain I that is exposed only during the membrane fusion transition. By revealing the details of the molecular landscape of the West Nile virus surface, our structure will assist the design of antiviral vaccines and therapeutics.
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==About this Structure==
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Crystal structure of west nile virus envelope glycoprotein reveals viral surface epitopes.,Kanai R, Kar K, Anthony K, Gould LH, Ledizet M, Fikrig E, Marasco WA, Koski RA, Modis Y J Virol. 2006 Nov;80(22):11000-8. Epub 2006 Aug 30. PMID:16943291<ref>PMID:16943291</ref>
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2I69 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/West_nile_virus West nile virus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=2I69 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of west nile virus envelope glycoprotein reveals viral surface epitopes., Kanai R, Kar K, Anthony K, Gould LH, Ledizet M, Fikrig E, Marasco WA, Koski RA, Modis Y, J Virol. 2006 Nov;80(22):11000-8. Epub 2006 Aug 30. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=16943291 16943291]
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</div>
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[[Category: Single protein]]
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<div class="pdbe-citations 2i69" style="background-color:#fffaf0;"></div>
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[[Category: West nile virus]]
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== References ==
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[[Category: Kanai, R.]]
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<references/>
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[[Category: Modis, Y.]]
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__TOC__
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[[Category: antibody epitope]]
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</StructureSection>
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[[Category: beta sandwich]]
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[[Category: Large Structures]]
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[[Category: glycoprotein]]
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[[Category: West Nile virus]]
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[[Category: igc]]
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[[Category: Kanai R]]
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[[Category: receptor binding]]
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[[Category: Modis Y]]
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[[Category: viral membrane fusion protein]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Sun Nov 18 09:50:51 2007''
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Current revision

Crystal structure of the West Nile virus envelope glycoprotein

PDB ID 2i69

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