2yzu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:40, 30 October 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2yzu.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of oxidized thioredoxin from Thermus thermophilus HB8==
-
The line below this paragraph, containing "STRUCTURE_2yzu", creates the "Structure Box" on the page.
+
<StructureSection load='2yzu' size='340' side='right'caption='[[2yzu]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2yzu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YZU FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_2yzu| PDB=2yzu | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yzu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yzu OCA], [https://pdbe.org/2yzu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yzu RCSB], [https://www.ebi.ac.uk/pdbsum/2yzu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yzu ProSAT], [https://www.topsan.org/Proteins/RSGI/2yzu TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5SHI3_THET8 Q5SHI3_THET8]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yz/2yzu_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yzu ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of oxidized thioredoxin from Thermus thermophilus HB8'''
+
==See Also==
-
 
+
*[[Thioredoxin 3D structures|Thioredoxin 3D structures]]
-
 
+
__TOC__
-
==About this Structure==
+
</StructureSection>
-
2YZU is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YZU OCA].
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Thermus thermophilus HB8]]
-
[[Category: Thermus thermophilus]]
+
[[Category: Ebihara A]]
-
[[Category: Ebihara, A.]]
+
[[Category: Kuramitsu S]]
-
[[Category: Kuramitsu, S.]]
+
[[Category: Yanai H]]
-
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
+
[[Category: Yokoyama S]]
-
[[Category: Yanai, H.]]
+
-
[[Category: Yokoyama, S.]]
+
-
[[Category: Electron transport]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Redox protein]]
+
-
[[Category: Riken structural genomics/proteomics initiative]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Structural genomic]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 19:45:11 2008''
+

Current revision

Crystal structure of oxidized thioredoxin from Thermus thermophilus HB8

PDB ID 2yzu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools