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2z1m

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[[Image:2z1m.jpg|left|200px]]
 
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==Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5==
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The line below this paragraph, containing "STRUCTURE_2z1m", creates the "Structure Box" on the page.
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<StructureSection load='2z1m' size='340' side='right'caption='[[2z1m]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2z1m]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z1M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2Z1M FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene></td></tr>
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{{STRUCTURE_2z1m| PDB=2z1m | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2z1m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2z1m OCA], [https://pdbe.org/2z1m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2z1m RCSB], [https://www.ebi.ac.uk/pdbsum/2z1m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2z1m ProSAT], [https://www.topsan.org/Proteins/RSGI/2z1m TOPSAN]</span></td></tr>
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</table>
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'''Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5'''
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== Function ==
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[https://www.uniprot.org/uniprot/O67175_AQUAE O67175_AQUAE] Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6-deoxy-D-mannose (By similarity).[HAMAP-Rule:MF_00955]
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== Evolutionary Conservation ==
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==About this Structure==
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[[Image:Consurf_key_small.gif|200px|right]]
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2Z1M is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Z1M OCA].
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Check<jmol>
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[[Category: Aquifex aeolicus]]
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<jmolCheckbox>
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[[Category: GDP-mannose 4,6-dehydratase]]
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/z1/2z1m_consurf.spt"</scriptWhenChecked>
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[[Category: Single protein]]
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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[[Category: Kuramitsu, S.]]
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Niwa, H.]]
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</jmolCheckbox>
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[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2z1m ConSurf].
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[[Category: Yokoyama, S.]]
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<div style="clear:both"></div>
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[[Category: Lyase]]
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__TOC__
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[[Category: National project on protein structural and functional analyse]]
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</StructureSection>
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[[Category: Nppsfa]]
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[[Category: Aquifex aeolicus VF5]]
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[[Category: Riken structural genomics/proteomics initiative]]
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[[Category: Large Structures]]
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[[Category: Rsgi]]
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[[Category: Kuramitsu S]]
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[[Category: Short-chain dehydrogenase/reductase]]
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[[Category: Niwa H]]
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[[Category: Structural genomic]]
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[[Category: Yokoyama S]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 19:49:49 2008''
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Current revision

Crystal Structure of GDP-D-Mannose Dehydratase from Aquifex aeolicus VF5

PDB ID 2z1m

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