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359d

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[[Image:359d.jpg|left|200px]]
 
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==INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)==
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The line below this paragraph, containing "STRUCTURE_359d", creates the "Structure Box" on the page.
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<StructureSection load='359d' size='340' side='right'caption='[[359d]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[359d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=359D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=359D FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TB:TERBIUM(III)+ION'>TB</scene></td></tr>
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{{STRUCTURE_359d| PDB=359d | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=359d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=359d OCA], [https://pdbe.org/359d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=359d RCSB], [https://www.ebi.ac.uk/pdbsum/359d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=359d ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Terbium(III) [Tb(III)] was shown to inhibit the hammerhead ribozyme by competing with a single magnesium(II) ion. X-ray crystallography revealed that the Tb(III) ion binds to a site adjacent to an essential guanosine in the catalytic core of the ribozyme, approximately 10 angstroms from the cleavage site. Synthetic modifications near this binding site yielded an RNA substrate that was resistant to Tb(III) binding and capable of being cleaved, even in the presence of up to 20 micromolar Tb(III). It is suggested that the magnesium(II) ion thought to bind at this site may act as a switch, affecting the conformational changes required to achieve the transition state.
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'''INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)'''
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Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of Tb.,Feig AL, Scott WG, Uhlenbeck OC Science. 1998 Jan 2;279(5347):81-4. PMID:9417029<ref>PMID:9417029</ref>
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==Overview==
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Terbium(III) [Tb(III)] was shown to inhibit the hammerhead ribozyme by competing with a single magnesium(II) ion. X-ray crystallography revealed that the Tb(III) ion binds to a site adjacent to an essential guanosine in the catalytic core of the ribozyme, approximately 10 angstroms from the cleavage site. Synthetic modifications near this binding site yielded an RNA substrate that was resistant to Tb(III) binding and capable of being cleaved, even in the presence of up to 20 micromolar Tb(III). It is suggested that the magnesium(II) ion thought to bind at this site may act as a switch, affecting the conformational changes required to achieve the transition state.
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==About this Structure==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=359D OCA].
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</div>
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<div class="pdbe-citations 359d" style="background-color:#fffaf0;"></div>
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==Reference==
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==See Also==
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Inhibition of the hammerhead ribozyme cleavage reaction by site-specific binding of Tb., Feig AL, Scott WG, Uhlenbeck OC, Science. 1998 Jan 2;279(5347):81-4. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9417029 9417029]
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*[[Ribozyme 3D structures|Ribozyme 3D structures]]
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[[Category: Feig, A L.]]
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== References ==
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[[Category: Scott, W G.]]
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<references/>
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[[Category: Uhlenbeck, O C.]]
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__TOC__
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[[Category: Catalytic rna]]
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</StructureSection>
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[[Category: Loop]]
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[[Category: Large Structures]]
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[[Category: Rna hammerhead ribozyme]]
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[[Category: Feig AL]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 20:17:09 2008''
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[[Category: Scott WG]]
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[[Category: Uhlenbeck OC]]

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INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)

PDB ID 359d

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