3bee

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:37, 21 November 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bee.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of putative YfrE protein from Vibrio parahaemolyticus==
-
The line below this paragraph, containing "STRUCTURE_3bee", creates the "Structure Box" on the page.
+
<StructureSection load='3bee' size='340' side='right'caption='[[3bee]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bee]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BEE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.15&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3bee| PDB=3bee | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bee OCA], [https://pdbe.org/3bee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bee RCSB], [https://www.ebi.ac.uk/pdbsum/3bee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bee ProSAT], [https://www.topsan.org/Proteins/MCSG/3bee TOPSAN]</span></td></tr>
-
 
+
</table>
-
'''Crystal structure of putative YfrE protein from Vibrio parahaemolyticus'''
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
==About this Structure==
+
<jmolCheckbox>
-
3BEE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_rimd_2210633 Vibrio parahaemolyticus rimd 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BEE OCA].
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/be/3bee_consurf.spt"</scriptWhenChecked>
-
[[Category: Single protein]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
-
[[Category: Vibrio parahaemolyticus rimd 2210633]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Abdullah, J.]]
+
</jmolCheckbox>
-
[[Category: Chang, C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bee ConSurf].
-
[[Category: Hatzos, C.]]
+
<div style="clear:both"></div>
-
[[Category: Joachimiak, A.]]
+
__TOC__
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</StructureSection>
-
[[Category: Mcsg]]
+
[[Category: Large Structures]]
-
[[Category: Midwest center for structural genomic]]
+
[[Category: Vibrio parahaemolyticus RIMD 2210633]]
-
[[Category: Protein structure initiative]]
+
[[Category: Abdullah J]]
-
[[Category: Psi-2]]
+
[[Category: Chang C]]
-
[[Category: Putaive yfre protein]]
+
[[Category: Hatzos C]]
-
[[Category: Structural genomic]]
+
[[Category: Joachimiak A]]
-
[[Category: Tpr repeat]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Vibrio parahaemolyticus]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 20:40:45 2008''
+

Current revision

Crystal structure of putative YfrE protein from Vibrio parahaemolyticus

PDB ID 3bee

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools