This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bv8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (19:03, 20 October 2021) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3bv8.jpg|left|200px]]
 
-
<!--
+
==Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus==
-
The line below this paragraph, containing "STRUCTURE_3bv8", creates the "Structure Box" on the page.
+
<StructureSection load='3bv8' size='340' side='right'caption='[[3bv8]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3bv8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staam Staam]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BV8 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
-->
+
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
{{STRUCTURE_3bv8| PDB=3bv8 | SCENE= }}
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dapD, SAV1397 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=158878 STAAM])</td></tr>
-
 
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3bv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bv8 OCA], [https://pdbe.org/3bv8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3bv8 RCSB], [https://www.ebi.ac.uk/pdbsum/3bv8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3bv8 ProSAT], [https://www.topsan.org/Proteins/MCSG/3bv8 TOPSAN]</span></td></tr>
-
'''Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus'''
+
</table>
-
 
+
== Function ==
-
 
+
[[https://www.uniprot.org/uniprot/DAPH_STAAM DAPH_STAAM]] Catalyzes the transfer of an acetyl group from acetyl-CoA to tetrahydrodipicolinate.[HAMAP-Rule:MF_01691]
-
==About this Structure==
+
== Evolutionary Conservation ==
-
3BV8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_mu50 Staphylococcus aureus subsp. aureus mu50]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BV8 OCA].
+
[[Image:Consurf_key_small.gif|200px|right]]
-
[[Category: Single protein]]
+
Check<jmol>
-
[[Category: Staphylococcus aureus subsp. aureus mu50]]
+
<jmolCheckbox>
-
[[Category: Clancy, S.]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bv/3bv8_consurf.spt"</scriptWhenChecked>
-
[[Category: Cuff, M E.]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Duggan, E.]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Joachimiak, A.]]
+
</jmolCheckbox>
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3bv8 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Staam]]
 +
[[Category: Clancy, S]]
 +
[[Category: Cuff, M E]]
 +
[[Category: Duggan, E]]
 +
[[Category: Joachimiak, A]]
 +
[[Category: Structural genomic]]
[[Category: Acetyltransferase]]
[[Category: Acetyltransferase]]
[[Category: Mcsg]]
[[Category: Mcsg]]
-
[[Category: Midwest center for structural genomic]]
 
[[Category: Pfam08503]]
[[Category: Pfam08503]]
-
[[Category: Protein structure initiative]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: Psi-2]]
+
[[Category: Transferase]]
-
[[Category: Structural genomic]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 21:08:47 2008''
+

Current revision

Crystal structure of the N-terminal domain of tetrahydrodipicolinate acetyltransferase from Staphylococcus aureus

PDB ID 3bv8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bv8"
Personal tools