1aqf

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(New page: 200px<br /><applet load="1aqf" size="450" color="white" frame="true" align="right" spinBox="true" caption="1aqf, resolution 2.7&Aring;" /> '''PYRUVATE KINASE FROM ...)
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[[Image:1aqf.gif|left|200px]]<br /><applet load="1aqf" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1aqf, resolution 2.7&Aring;" />
 
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'''PYRUVATE KINASE FROM RABBIT MUSCLE WITH MG, K, AND L-PHOSPHOLACTATE'''<br />
 
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==Overview==
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==PYRUVATE KINASE FROM RABBIT MUSCLE WITH MG, K, AND L-PHOSPHOLACTATE==
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The structure of rabbit muscle pyruvate kinase crystallized as a complex, with Mg2+, K+, and L-phospholactate (L-P-lactate) has been solved and, refined to 2.7 A resolution. The crystals, grown from solutions of, polyethylene glycol 8000 at pH 7.5, belong to the space group P2(1) and, have unit cell parameters a = 144.4 A, b = 112.6 A, c = 171.2 A, and beta, = 93.7 degrees. The asymmetric unit contains two tetramers. The crystal, structure reveals that the eight subunits within the asymmetric unit adopt, several different conformations. These conformations are characterized by, differences in the relative positions of protein domains A and B, resulting in different degrees of closure of the active site cleft that, occupies the interface between these two domains. The global, conformational differences may be described as rotations of the B domain, with respect to the (beta/alpha)8-barrel of the A domain. Carbon atoms of, the backbone in domain B rotate &gt;20 degrees from the most open to the most, closed subunit. The different conformations among subunits within the, asymmetric unit are accompanied by 3-3.8 A shifts in the position of Mg2+, and a significant change in the orientation of the phenyl ring of Phe 243., In all of the subunits, Mg2+ coordinates to the protein through the, carboxylate side chains of Glu 271 and Asp 295. In the subunit having the, most closed conformation, Mg2+ also coordinates to the carboxylate oxygen, the bridging ester oxygen, and a nonbridging phosphoryl oxygen of, L-P-lactate. Mg2+ to L-P-lactate coordination is missing in subunits, exhibiting a more open conformation. K+ coordinates to four protein, ligands and to a phosphoryl oxygen of the L-P-lactate. The position and, liganding of K+ are unaffected by the different conformations of the, subunits. The side chain of Arg 72, Mg2+, and K+ provides a locus of, positive charge for the phosphate moiety of the analog in the closed, subunit.
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<StructureSection load='1aqf' size='340' side='right'caption='[[1aqf]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1aqf]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1AQF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1AQF FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PEQ:L-PHOSPHOLACTATE'>PEQ</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1aqf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1aqf OCA], [https://pdbe.org/1aqf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1aqf RCSB], [https://www.ebi.ac.uk/pdbsum/1aqf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1aqf ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KPYM_RABIT KPYM_RABIT] Glycolytic enzyme that catalyzes the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) to ADP, generating ATP. Stimulates POU5F1-mediated transcriptional activation (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aq/1aqf_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1aqf ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1AQF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Oryctolagus_cuniculus Oryctolagus cuniculus] with K, MG and PEQ as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Pyruvate_kinase Pyruvate kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.40 2.7.1.40] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1AQF OCA].
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*[[Pyruvate kinase 3D structures|Pyruvate kinase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Ligand-induced domain movement in pyruvate kinase: structure of the enzyme from rabbit muscle with Mg2+, K+, and L-phospholactate at 2.7 A resolution., Larsen TM, Benning MM, Wesenberg GE, Rayment I, Reed GH, Arch Biochem Biophys. 1997 Sep 15;345(2):199-206. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9308890 9308890]
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[[Category: Large Structures]]
[[Category: Oryctolagus cuniculus]]
[[Category: Oryctolagus cuniculus]]
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[[Category: Pyruvate kinase]]
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[[Category: Benning MM]]
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[[Category: Single protein]]
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[[Category: Larsen TM]]
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[[Category: Benning, M.M.]]
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[[Category: Rayment I]]
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[[Category: Larsen, T.M.]]
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[[Category: Reed GH]]
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[[Category: Rayment, I.]]
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[[Category: Wesenberg GE]]
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[[Category: Reed, G.H.]]
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[[Category: Wesenberg, G.E.]]
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[[Category: K]]
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[[Category: MG]]
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[[Category: PEQ]]
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[[Category: domain movement]]
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[[Category: potassium binding]]
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[[Category: pyruvate kinase]]
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[[Category: rabbit muscle]]
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[[Category: transferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:02:48 2007''
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Current revision

PYRUVATE KINASE FROM RABBIT MUSCLE WITH MG, K, AND L-PHOSPHOLACTATE

PDB ID 1aqf

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