1asl

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(New page: 200px<br /><applet load="1asl" size="450" color="white" frame="true" align="right" spinBox="true" caption="1asl, resolution 2.60&Aring;" /> '''CRYSTAL STRUCTURES O...)
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[[Image:1asl.gif|left|200px]]<br /><applet load="1asl" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1asl, resolution 2.60&Aring;" />
 
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'''CRYSTAL STRUCTURES OF ESCHERICHIA COLI ASPARTATE AMINOTRANSFERASE IN TWO CONFORMATIONS: COMPARISON OF AN UNLIGANDED OPEN AND TWO LIGANDED CLOSED FORMS'''<br />
 
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==Overview==
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==CRYSTAL STRUCTURES OF ESCHERICHIA COLI ASPARTATE AMINOTRANSFERASE IN TWO CONFORMATIONS: COMPARISON OF AN UNLIGANDED OPEN AND TWO LIGANDED CLOSED FORMS==
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Three crystal structures of wild type E. coli aspartate aminotransferase, (E.C.2.6.1.1) in space group P2(1) have been determined at resolution, limits between 2.6 and 2.35 A. The unliganded enzyme and its complexes, with the substrate analogues maleate and 2-methylaspartate resulted in, different conformations. The unit cell parameters of the unliganded and, the inhibited enzyme are a = 87.2, b = 79.9, c = 89.8 A and beta = 119.1, degrees, and a = 85.4, b = 79.8, c = 89.5 A and beta = 118.6 degrees, respectively. The crystallographic symmetry is pseudo-C222(1). The, liganded enzyme structures were solved by difference Fourier techniques, from that of a Val39--&gt;Leu mutant partially refined to an R-factor of 0.22, at 2.85 A. They have a "closed" conformation like the chicken, mAATase:maleate complex. The models were refined to R-factors of 0.19, (maleate complex) and 0.18 (2-methylaspartate complex) by molecular, dynamics and restrained least squares methods. The unliganded crystal form, was solved by molecular replacement and refined to an R-factor of 0.19 at, 2.5 A resolution. The structure is in a "half-open" conformation, with the, small domain rotated about 6 degrees from the closed conformation. The, cofactor pyridoxal phosphate has a more relaxed conformation than in, mAATase. Both maleate and 2-methylaspartate are hydrogen-bonded to the, active site as in mAATase. The C alpha-CH3 bond of 2-methylaspartate is, oriented at right angles to the cofactor pyridine ring, the most, productive orientation for alpha-deprotonation of the substrate, L-aspartate. Comparisons with earlier determined eAATase structures in, space group C222(1) revealed differences that can probably be attributed, to the somewhat lower resolution of the orthorhombic structures and/or, mutations in the eAATases used in those studies. The present P2(1), structures confirm the justification of extrapolating properties of active, site point mutants to the vertebrate isozymes. They will serve as, reference in the interpretation of the properties of further site-directed, mutants in continued studies of structure-function relationships of this, enzyme.
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<StructureSection load='1asl' size='340' side='right'caption='[[1asl]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1asl]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1ASL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1ASL FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PLA:2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC+ACID'>PLA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1asl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1asl OCA], [https://pdbe.org/1asl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1asl RCSB], [https://www.ebi.ac.uk/pdbsum/1asl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1asl ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/AAT_ECOLI AAT_ECOLI]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/as/1asl_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1asl ConSurf].
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<div style="clear:both"></div>
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==About this Structure==
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==See Also==
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1ASL is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with PLA as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Aspartate_transaminase Aspartate transaminase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.6.1.1 2.6.1.1] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1ASL OCA].
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*[[Aspartate aminotransferase 3D structures|Aspartate aminotransferase 3D structures]]
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__TOC__
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==Reference==
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</StructureSection>
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Crystal structures of Escherichia coli aspartate aminotransferase in two conformations. Comparison of an unliganded open and two liganded closed forms., Jager J, Moser M, Sauder U, Jansonius JN, J Mol Biol. 1994 Jun 3;239(2):285-305. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=8196059 8196059]
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[[Category: Aspartate transaminase]]
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[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Jaeger, J.]]
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[[Category: Jaeger J]]
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[[Category: Jansonius, J.N.]]
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[[Category: Jansonius JN]]
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[[Category: PLA]]
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[[Category: aminotransferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:06:18 2007''
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Current revision

CRYSTAL STRUCTURES OF ESCHERICHIA COLI ASPARTATE AMINOTRANSFERASE IN TWO CONFORMATIONS: COMPARISON OF AN UNLIGANDED OPEN AND TWO LIGANDED CLOSED FORMS

PDB ID 1asl

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