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2jic

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(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_2jic", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
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[[Image:2jic.jpg|left|200px]]
 
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==High resolution structure of xylanase-II from one micron beam experiment==
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The line below this paragraph, containing "STRUCTURE_2jic", creates the "Structure Box" on the page.
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<StructureSection load='2jic' size='340' side='right'caption='[[2jic]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2jic]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_longibrachiatum Trichoderma longibrachiatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JIC FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jic OCA], [https://pdbe.org/2jic PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jic RCSB], [https://www.ebi.ac.uk/pdbsum/2jic PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jic ProSAT]</span></td></tr>
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{{STRUCTURE_2jic| PDB=2jic | SCENE= }}
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</table>
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== Function ==
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'''HIGH RESOLUTION STRUCTURE OF XYLANASE-II FROM ONE MICRON BEAM EXPERIMENT'''
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[https://www.uniprot.org/uniprot/F8W669_TRILO F8W669_TRILO]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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==Overview==
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ji/2jic_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2jic ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
For the first time, protein microcrystallography has been performed with a focused synchrotron-radiation beam of 1 microm using a goniometer with a sub-micrometre sphere of confusion. The crystal structure of xylanase II has been determined with a flux density of about 3 x 10(10) photons s(-1) microm(-2) at the sample. Two sets of diffraction images collected from different sized crystals were shown to comprise data of good quality, which allowed a 1.5 A resolution xylanase II structure to be obtained. The main conclusion of this experiment is that a high-resolution diffraction pattern can be obtained from 20 microm(3) crystal volume, corresponding to about 2 x 10(8) unit cells. Despite the high irradiation dose in this case, it was possible to obtain an excellent high-resolution map and it could be concluded from the individual atomic B-factor patterns that there was no evidence of significant radiation damage. The photoelectron escape from a narrow diffraction channel is a possible reason for reduced radiation damage as indicated by Monte Carlo simulations. These results open many new opportunities in scanning protein microcrystallography and make random data collection from microcrystals a real possibility, therefore enabling structures to be solved from much smaller crystals than previously anticipated as long as the crystallites are well ordered.
For the first time, protein microcrystallography has been performed with a focused synchrotron-radiation beam of 1 microm using a goniometer with a sub-micrometre sphere of confusion. The crystal structure of xylanase II has been determined with a flux density of about 3 x 10(10) photons s(-1) microm(-2) at the sample. Two sets of diffraction images collected from different sized crystals were shown to comprise data of good quality, which allowed a 1.5 A resolution xylanase II structure to be obtained. The main conclusion of this experiment is that a high-resolution diffraction pattern can be obtained from 20 microm(3) crystal volume, corresponding to about 2 x 10(8) unit cells. Despite the high irradiation dose in this case, it was possible to obtain an excellent high-resolution map and it could be concluded from the individual atomic B-factor patterns that there was no evidence of significant radiation damage. The photoelectron escape from a narrow diffraction channel is a possible reason for reduced radiation damage as indicated by Monte Carlo simulations. These results open many new opportunities in scanning protein microcrystallography and make random data collection from microcrystals a real possibility, therefore enabling structures to be solved from much smaller crystals than previously anticipated as long as the crystallites are well ordered.
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==About this Structure==
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Protein crystallography with a micrometre-sized synchrotron-radiation beam.,Moukhametzianov R, Burghammer M, Edwards PC, Petitdemange S, Popov D, Fransen M, McMullan G, Schertler GF, Riekel C Acta Crystallogr D Biol Crystallogr. 2008 Feb;64(Pt 2):158-66. Epub 2008, Jan 16. PMID:18219115<ref>PMID:18219115</ref>
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2JIC is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Trichoderma_longibrachiatum Trichoderma longibrachiatum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JIC OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Protein crystallography with a micrometre-sized synchrotron-radiation beam., Moukhametzianov R, Burghammer M, Edwards PC, Petitdemange S, Popov D, Fransen M, McMullan G, Schertler GF, Riekel C, Acta Crystallogr D Biol Crystallogr. 2008 Feb;64(Pt 2):158-66. Epub 2008, Jan 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18219115 18219115]
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</div>
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[[Category: Endo-1,4-beta-xylanase]]
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<div class="pdbe-citations 2jic" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Trichoderma longibrachiatum]]
[[Category: Trichoderma longibrachiatum]]
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[[Category: Burghammer, M.]]
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[[Category: Burghammer M]]
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[[Category: Edwards, P C.]]
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[[Category: Edwards PC]]
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[[Category: Fransen, M.]]
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[[Category: Fransen M]]
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[[Category: Moukhametzianov, R.]]
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[[Category: Moukhametzianov R]]
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[[Category: Petitdemange, S.]]
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[[Category: Petitdemange S]]
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[[Category: Popov, D.]]
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[[Category: Popov D]]
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[[Category: Riekel, C.]]
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[[Category: Riekel C]]
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[[Category: Schertler, G F.]]
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[[Category: Schertler GF]]
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[[Category: Endonuclease]]
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[[Category: Fungi]]
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[[Category: Glycosidase]]
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[[Category: Hydrolase]]
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[[Category: Microbeam]]
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[[Category: Xylan]]
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[[Category: Xylan degradation]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 14 11:19:33 2008''
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High resolution structure of xylanase-II from one micron beam experiment

PDB ID 2jic

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