This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2pq4

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_2pq4", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
Current revision (09:43, 22 May 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2pq4.jpg|left|200px]]
 
-
<!--
+
==NMR solution structure of NapD in complex with NapA1-35 signal peptide==
-
The line below this paragraph, containing "STRUCTURE_2pq4", creates the "Structure Box" on the page.
+
<StructureSection load='2pq4' size='340' side='right'caption='[[2pq4]]' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[2pq4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PQ4 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pq4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pq4 OCA], [https://pdbe.org/2pq4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pq4 RCSB], [https://www.ebi.ac.uk/pdbsum/2pq4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pq4 ProSAT]</span></td></tr>
-
{{STRUCTURE_2pq4| PDB=2pq4 | SCENE= }}
+
</table>
-
 
+
== Function ==
-
'''NMR solution structure of NapD in complex with NapA1-35 signal peptide'''
+
[https://www.uniprot.org/uniprot/NAPD_ECOLI NAPD_ECOLI] Plays a role in the correct assembly of subunits of the periplasmic NapAB enzyme.
-
 
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
==About this Structure==
+
Check<jmol>
-
2PQ4 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PQ4 OCA].
+
<jmolCheckbox>
-
[[Category: Escherichia coli]]
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/pq/2pq4_consurf.spt"</scriptWhenChecked>
-
[[Category: Nitrate reductase]]
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Protein complex]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: BSGI, Montreal-Kingston Bacterial Structural Genomics Initiative.]]
+
</jmolCheckbox>
-
[[Category: Ekiel, I.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2pq4 ConSurf].
-
[[Category: Milad, M.]]
+
<div style="clear:both"></div>
-
[[Category: Minailiuc, O M.]]
+
__TOC__
-
[[Category: Alpha-helix]]
+
</StructureSection>
-
[[Category: Bsgi]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Chaperone/oxidoreductase complex]]
+
[[Category: Large Structures]]
-
[[Category: Mixed beta-alpha sandwich structure]]
+
[[Category: Ekiel I]]
-
[[Category: Montreal-kingston bacterial structural genomics initiative]]
+
[[Category: Milad M]]
-
[[Category: Napd/napa1-35]]
+
[[Category: Minailiuc OM]]
-
[[Category: Protein structure initiative]]
+
-
[[Category: Protein-peptide complex]]
+
-
[[Category: Psi]]
+
-
[[Category: Structural genomic]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 22 21:32:20 2008''
+

Current revision

NMR solution structure of NapD in complex with NapA1-35 signal peptide

PDB ID 2pq4

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pq4"
Personal tools