This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3c2h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px <!-- The line below this paragraph, containing "STRUCTURE_3c2h", creates the "Structure Box" on the page. You may change the PDB parameter (which sets the PD...)
Current revision (09:32, 21 February 2024) (edit) (undo)
 
(8 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:3c2h.jpg|left|200px]]
 
-
<!--
+
==Crystal Structure of SYS-1 at 2.6A resolution==
-
The line below this paragraph, containing "STRUCTURE_3c2h", creates the "Structure Box" on the page.
+
<StructureSection load='3c2h' size='340' side='right'caption='[[3c2h]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[3c2h]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C2H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C2H FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
{{STRUCTURE_3c2h| PDB=3c2h | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c2h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c2h OCA], [https://pdbe.org/3c2h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c2h RCSB], [https://www.ebi.ac.uk/pdbsum/3c2h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c2h ProSAT]</span></td></tr>
-
 
+
</table>
-
'''Crystal Structure of SYS-1 at 2.6A resolution'''
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/Q9XVI2_CAEEL Q9XVI2_CAEEL]
-
 
+
__TOC__
-
==Overview==
+
</StructureSection>
-
C. elegans SYS-1 has key functional characteristics of a canonical beta-catenin, but no significant sequence similarity. Here, we report the SYS-1 crystal structure, both on its own and in a complex with POP-1, the C. elegans TCF homolog. The two structures possess signature features of canonical beta-catenin and the beta-catenin/TCF complex that could not be predicted by sequence. Most importantly, SYS-1 bears 12 armadillo repeats and the SYS-1/POP-1 interface is anchored by a conserved salt-bridge, the "charged button." We also modeled structures for three other C. elegans beta-catenins to predict the molecular basis of their distinct binding properties. Finally, we generated a phylogenetic tree, using the region of highest structural similarity between SYS-1 and beta-catenin, and found that SYS-1 clusters robustly within the beta-catenin clade. We conclude that the SYS-1 protein belongs to the beta-catenin family and suggest that additional divergent beta-catenins await discovery.
+
-
 
+
-
==About this Structure==
+
-
3C2H is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C2H OCA].
+
-
 
+
-
==Reference==
+
-
The C. elegans SYS-1 protein is a bona fide beta-catenin., Liu J, Phillips BT, Amaya MF, Kimble J, Xu W, Dev Cell. 2008 May;14(5):751-61. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18477457 18477457]
+
[[Category: Caenorhabditis elegans]]
[[Category: Caenorhabditis elegans]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Amaya, M F.]]
+
[[Category: Amaya MF]]
-
[[Category: Kimble, J.]]
+
[[Category: Kimble J]]
-
[[Category: Liu, J.]]
+
[[Category: Liu J]]
-
[[Category: Phillips, B T.]]
+
[[Category: Phillips BT]]
-
[[Category: Xu, W.]]
+
[[Category: Xu W]]
-
[[Category: Beta-catenin]]
+
-
[[Category: Caenorhabditis elegan]]
+
-
[[Category: Cell adhesion]]
+
-
[[Category: Sys-1]]
+
-
[[Category: Wnt]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu May 22 21:54:11 2008''
+

Current revision

Crystal Structure of SYS-1 at 2.6A resolution

PDB ID 3c2h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools