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1bay

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(New page: 200px<br /><applet load="1bay" size="450" color="white" frame="true" align="right" spinBox="true" caption="1bay, resolution 2.0&Aring;" /> '''GLUTATHIONE S-TRANSFE...)
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[[Image:1bay.jpg|left|200px]]<br /><applet load="1bay" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1bay, resolution 2.0&Aring;" />
 
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'''GLUTATHIONE S-TRANSFERASE YFYF CYS 47-CARBOXYMETHYLATED CLASS PI, FREE ENZYME'''<br />
 
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==Overview==
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==GLUTATHIONE S-TRANSFERASE YFYF CYS 47-CARBOXYMETHYLATED CLASS PI, FREE ENZYME==
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The three-dimensional structure of mouse liver glutathione S-transferase, P1-1 carboxymethylated at Cys-47 and its complex with, S-(p-nitrobenzyl)glutathione have been determined by x-ray diffraction, analysis. The structure of the modified enzyme described here is the first, structural report for a Pi class glutathione S-transferase with no, glutathione, glutathione S-conjugate, or inhibitor bound. It shows that, part of the active site area, which includes helix alphaB and helix 310B, is disordered. However, the environment of Tyr-7, an essential residue for, the catalytic reaction, remains unchanged. The position of the sulfur atom, of glutathione is occupied in the ligand-free enzyme by a water molecule, that is at H-bond distance from Tyr-7. We do not find any structural, evidence for a tyrosinate form, and therefore our results suggest that, Tyr-7 is not acting as a general base abstracting the proton from the, thiol group of glutathione. The binding of the inhibitor, S-(p-nitrobenzyl)-glutathione to the carboxymethylated enzyme results in a, partial restructuring of the disordered area. The modification of Cys-47, sterically hinders structural organization of this region, and although it, does not prevent glutathione binding, it significantly reduces the, affinity. A detailed kinetic study of the modified enzyme indicates that, the carboxymethylation increases the Km for glutathione by 3 orders of, magnitude, although the enzyme can function efficiently under saturating, conditions.
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<StructureSection load='1bay' size='340' side='right'caption='[[1bay]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1bay]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BAY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BAY FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bay FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bay OCA], [https://pdbe.org/1bay PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bay RCSB], [https://www.ebi.ac.uk/pdbsum/1bay PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bay ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/GSTP1_MOUSE GSTP1_MOUSE] Conjugation of reduced glutathione to a wide number of exogenous and endogenous hydrophobic electrophiles. Can metabolize 1-chloro-2,4-dinitrobenzene. Regulates negatively CDK5 activity via p25/p35 translocation to prevent neurodegeneration (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ba/1bay_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bay ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The three-dimensional structure of mouse liver glutathione S-transferase P1-1 carboxymethylated at Cys-47 and its complex with S-(p-nitrobenzyl)glutathione have been determined by x-ray diffraction analysis. The structure of the modified enzyme described here is the first structural report for a Pi class glutathione S-transferase with no glutathione, glutathione S-conjugate, or inhibitor bound. It shows that part of the active site area, which includes helix alphaB and helix 310B, is disordered. However, the environment of Tyr-7, an essential residue for the catalytic reaction, remains unchanged. The position of the sulfur atom of glutathione is occupied in the ligand-free enzyme by a water molecule that is at H-bond distance from Tyr-7. We do not find any structural evidence for a tyrosinate form, and therefore our results suggest that Tyr-7 is not acting as a general base abstracting the proton from the thiol group of glutathione. The binding of the inhibitor S-(p-nitrobenzyl)-glutathione to the carboxymethylated enzyme results in a partial restructuring of the disordered area. The modification of Cys-47 sterically hinders structural organization of this region, and although it does not prevent glutathione binding, it significantly reduces the affinity. A detailed kinetic study of the modified enzyme indicates that the carboxymethylation increases the Km for glutathione by 3 orders of magnitude, although the enzyme can function efficiently under saturating conditions.
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==About this Structure==
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The three-dimensional structure of Cys-47-modified mouse liver glutathione S-transferase P1-1. Carboxymethylation dramatically decreases the affinity for glutathione and is associated with a loss of electron density in the alphaB-310B region.,Vega MC, Walsh SB, Mantle TJ, Coll M J Biol Chem. 1998 Jan 30;273(5):2844-50. PMID:9446594<ref>PMID:9446594</ref>
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1BAY is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Active as [http://en.wikipedia.org/wiki/Glutathione_transferase Glutathione transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.18 2.5.1.18] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1BAY OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The three-dimensional structure of Cys-47-modified mouse liver glutathione S-transferase P1-1. Carboxymethylation dramatically decreases the affinity for glutathione and is associated with a loss of electron density in the alphaB-310B region., Vega MC, Walsh SB, Mantle TJ, Coll M, J Biol Chem. 1998 Jan 30;273(5):2844-50. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9446594 9446594]
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</div>
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[[Category: Glutathione transferase]]
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<div class="pdbe-citations 1bay" style="background-color:#fffaf0;"></div>
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[[Category: Mus musculus]]
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[[Category: Single protein]]
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[[Category: Coll, M.]]
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[[Category: Vega, M.C.]]
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[[Category: multigene family]]
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[[Category: transferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:30:58 2007''
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==See Also==
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*[[Glutathione S-transferase 3D structures|Glutathione S-transferase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Mus musculus]]
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[[Category: Coll M]]
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[[Category: Vega MC]]

Current revision

GLUTATHIONE S-TRANSFERASE YFYF CYS 47-CARBOXYMETHYLATED CLASS PI, FREE ENZYME

PDB ID 1bay

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