1r5p

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[[Image:1r5p.jpg|left|200px]]
 
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==Crystal Structure Analysis of KaiB from PCC7120==
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The line below this paragraph, containing "STRUCTURE_1r5p", creates the "Structure Box" on the page.
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<StructureSection load='1r5p' size='340' side='right'caption='[[1r5p]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1r5p]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. The January 2008 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Circadian Clock Proteins'' by David S. Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2008_1 10.2210/rcsb_pdb/mom_2008_1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R5P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1R5P FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1r5p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1r5p OCA], [https://pdbe.org/1r5p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1r5p RCSB], [https://www.ebi.ac.uk/pdbsum/1r5p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1r5p ProSAT]</span></td></tr>
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{{STRUCTURE_1r5p| PDB=1r5p | SCENE= }}
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/KAIB_NOSS1 KAIB_NOSS1] Component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The KaiABC complex may act as a promoter-non-specific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, it decreases the phosphorylation status of KaiC. It has no effect on KaiC by itself, but instead needs the presence of both KaiA and KaiC, suggesting that it acts by antagonizing the interaction between KaiA and KaiC (By similarity).
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/r5/1r5p_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1r5p ConSurf].
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<div style="clear:both"></div>
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'''Crystal Structure Analysis of KaiB from PCC7120'''
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==See Also==
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*[[Circadian clock protein 3D structures|Circadian clock protein 3D structures]]
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__TOC__
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==Overview==
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</StructureSection>
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The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. Here, we present molecular models of both KaiA and KaiB from the cyanobacteria Anabaena sp PCC7120 deduced by crystal structure analysis, and we discuss how clock-changing or abolishing mutations may cause their resulting circadian phenotype. The overall fold of the KaiA monomer is that of a four-helix bundle. KaiB, on the other hand, adopts an alpha-beta meander motif. Both proteins purify and crystallize as dimers. While the folds of the two proteins are clearly different, their size and some surface features of the physiologically relevant dimers are very similar. Notably, the functionally relevant residues Arg 69 of KaiA and Arg 23 of KaiB align well in space. The apparent structural similarities suggest that KaiA and KaiB may compete for a potential common binding site on KaiC.
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[[Category: Circadian Clock Proteins]]
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[[Category: Large Structures]]
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==About this Structure==
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[[Category: Nostoc sp. PCC 7120 = FACHB-418]]
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1R5P is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Anabaena_sp. Anabaena sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1R5P OCA].
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[[Category: RCSB PDB Molecule of the Month]]
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[[Category: Garces RG]]
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==Reference==
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[[Category: Gillon W]]
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Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC., Garces RG, Wu N, Gillon W, Pai EF, EMBO J. 2004 Apr 21;23(8):1688-98. Epub 2004 Apr 8. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15071498 15071498]
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[[Category: Pai EF]]
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[[Category: Anabaena sp.]]
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[[Category: Wu N]]
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[[Category: Single protein]]
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[[Category: Garces, R G.]]
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[[Category: Gillon, W.]]
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[[Category: Pai, E F.]]
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[[Category: Wu, N.]]
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[[Category: Alpha-beta meander]]
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[[Category: Protein dimer]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon May 26 22:49:53 2008''
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Current revision

Crystal Structure Analysis of KaiB from PCC7120

PDB ID 1r5p

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