2jr3

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[[Image:2jr3.jpg|left|200px]]
 
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==Antibacterial Peptide from Eggshell Matrix: Structure and Self-assembly of beta-defensin Like Peptide from the Chinese Soft-shelled Turtle Eggshell==
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The line below this paragraph, containing "STRUCTURE_2jr3", creates the "Structure Box" on the page.
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<StructureSection load='2jr3' size='340' side='right'caption='[[2jr3]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[2jr3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pelodiscus_sinensis Pelodiscus sinensis]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JR3 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jr3 OCA], [https://pdbe.org/2jr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jr3 RCSB], [https://www.ebi.ac.uk/pdbsum/2jr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jr3 ProSAT]</span></td></tr>
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{{STRUCTURE_2jr3| PDB=2jr3 | SCENE= }}
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</table>
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== Function ==
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'''Antibacterial Peptide from Eggshell Matrix: Structure and Self-assembly of beta-defensin Like Peptide from the Chinese Soft-shelled Turtle Eggshell'''
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[https://www.uniprot.org/uniprot/PVAT_PELSI PVAT_PELSI] Induces the nucleation and stabilization of vaterite, one of the crystalline polymorphs of calcium carbonate. Exhibits strong antimicrobial activity against Pseudomonas aeruginosa and Proteus vulgaris.<ref>PMID:15877362</ref> <ref>PMID:18341335</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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==Overview==
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Biomineral matrix formation and molecular recognition are two important processes associated with eggshell biomineralization. To understand these two processes, a major intracrystalline peptide, pelovaterin, was isolated from turtle (Pelodiscus sinensis) eggshell and its tertiary and quaternary structures were established. The global fold of pelovaterin is similar to that of human beta-defensins but has a large hydrophobic core and a short hydrophilic N-terminal segment, which is not preserved in defensins. Pelovaterin exhibits strong antimicrobial activity against two pathogenic gram-negative bacteria, Pseudomonas aeruginosa and Proteus vulgaris, and stabilizes a thin film of metastable vaterite. We show that pelovaterin self-aggregates in the form of micellar nanospheres and the aggregation in solution is entropy-driven. It is suggested that the micellar aggregation of pelovaterin is responsible for the induction and stabilization of the metastable phase by altering the interfacial energy. The results demonstrate the adaptability of an extracellular matrix protein to perform multiple tasks: polymorph discrimination and protection of the contents of the egg against bacterial invasion.
Biomineral matrix formation and molecular recognition are two important processes associated with eggshell biomineralization. To understand these two processes, a major intracrystalline peptide, pelovaterin, was isolated from turtle (Pelodiscus sinensis) eggshell and its tertiary and quaternary structures were established. The global fold of pelovaterin is similar to that of human beta-defensins but has a large hydrophobic core and a short hydrophilic N-terminal segment, which is not preserved in defensins. Pelovaterin exhibits strong antimicrobial activity against two pathogenic gram-negative bacteria, Pseudomonas aeruginosa and Proteus vulgaris, and stabilizes a thin film of metastable vaterite. We show that pelovaterin self-aggregates in the form of micellar nanospheres and the aggregation in solution is entropy-driven. It is suggested that the micellar aggregation of pelovaterin is responsible for the induction and stabilization of the metastable phase by altering the interfacial energy. The results demonstrate the adaptability of an extracellular matrix protein to perform multiple tasks: polymorph discrimination and protection of the contents of the egg against bacterial invasion.
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==About this Structure==
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Structure, self-assembly, and dual role of a beta-defensin-like peptide from the Chinese soft-shelled turtle eggshell matrix.,Lakshminarayanan R, Vivekanandan S, Samy RP, Banerjee Y, Chi-Jin EO, Teo KW, Jois SD, Kini RM, Valiyaveettil S J Am Chem Soc. 2008 Apr 9;130(14):4660-8. Epub 2008 Mar 15. PMID:18341335<ref>PMID:18341335</ref>
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2JR3 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pelodiscus_sinensis Pelodiscus sinensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JR3 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Structure, self-assembly, and dual role of a beta-defensin-like peptide from the Chinese soft-shelled turtle eggshell matrix., Lakshminarayanan R, Vivekanandan S, Samy RP, Banerjee Y, Chi-Jin EO, Teo KW, Jois SD, Kini RM, Valiyaveettil S, J Am Chem Soc. 2008 Apr 9;130(14):4660-8. Epub 2008 Mar 15. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/18341335 18341335]
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</div>
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<div class="pdbe-citations 2jr3" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
[[Category: Pelodiscus sinensis]]
[[Category: Pelodiscus sinensis]]
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[[Category: Single protein]]
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[[Category: Banerjee Y]]
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[[Category: Banerjee, Y.]]
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[[Category: Chi-Jin EO]]
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[[Category: Chi-Jin, E O.]]
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[[Category: Jois SDS]]
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[[Category: Jois, S D.S.]]
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[[Category: Kini RM]]
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[[Category: Kini, R M.]]
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[[Category: Lakshminarayanan R]]
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[[Category: Lakshminarayanan, R.]]
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[[Category: Perumal Samy R]]
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[[Category: Samy, R Perumal.]]
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[[Category: Teo KW]]
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[[Category: Teo, K W.]]
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[[Category: Valiyaveettil S]]
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[[Category: Valiyaveettil, S.]]
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[[Category: Vivekanandan S]]
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[[Category: Vivekanandan, S.]]
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[[Category: Antibacterial peptide]]
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[[Category: Antimicrobial protein]]
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[[Category: Beta-defensin like peptide]]
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[[Category: Chinese soft-shelled turtle eggshell]]
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[[Category: Eggshell matrix]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed May 28 09:11:12 2008''
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Current revision

Antibacterial Peptide from Eggshell Matrix: Structure and Self-assembly of beta-defensin Like Peptide from the Chinese Soft-shelled Turtle Eggshell

PDB ID 2jr3

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