Template:STRUCTURE 1ab4

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(Difference between revisions)

Current revision

Activity:

DNA topoisomerase (ATP-hydrolyzing), with EC number 5.99.1.3

Structural annotation:
Resources:	CATH : 1Ab4001, 1Ab4002, 1Ab4003 InterPro : Ipr002205, Ipr005743, Ipr013758, Ipr013757, Ipr013760, Ipr006691 Pfam : PF00521 SCOP : d1ab4__ UniProt : P0AES4

Functional annotation:
Cellular component:	membrane fraction cytoplasm chromosome
Biological process:	response to antibiotic DNA metabolic process DNA topological change DNA unwinding during replication
Molecular function:	DNA binding DNA topoisomerase activity ATP binding isomerase activity DNA topoisomerase (ATP-hydrolyzing) activity

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1ab4"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1ab4, resolution 2.8&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1ab4]], [[Resolution|resolution]] 2.80&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-|SITE=
-|LIGAND=
 |ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/DNA_topoisomerase_(ATP-hydrolyzing) DNA topoisomerase (ATP-hydrolyzing)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.99.1.3 5.99.1.3] </span>
-|GENE=
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00521 DNA_topoisoIV], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00187 TOP4c]</span>
-|RELATEDENTRY=
 |RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ab4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ab4 OCA], [http://www.ebi.ac.uk/pdbsum/1ab4 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ab4 RCSB]</span>
 |FUNCTION={{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0003916 | text = DNA topoisomerase activity}}{{GO|id=GO:0005524 | text = ATP binding}}{{GO|id=GO:0016853 | text = isomerase activity}}{{GO|id=GO:0003918 | text = DNA topoisomerase (ATP-hydrolyzing) activity}}
 |PROCESS={{GO|id=GO:0046677 | text = response to antibiotic}}{{GO|id=GO:0006259 | text = DNA metabolic process}}{{GO|id=GO:0006265 | text = DNA topological change}}{{GO|id=GO:0006268 | text = DNA unwinding during replication}}
 |COMPONENT={{GO|id=GO:0005624 | text = membrane fraction}}{{GO|id=GO:0005737 | text = cytoplasm}}{{GO|id=GO:0005694 | text = chromosome}}
-|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ab4001 1Ab4001]<br>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ab4002 1Ab4002]<br>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ab4003 1Ab4003]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43251 d1ab4__]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002205 Ipr002205]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005743 Ipr005743]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013758 Ipr013758]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013757 Ipr013757]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013760 Ipr013760]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006691 Ipr006691]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0AES4 P0AES4]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00521 PF00521]</span>
+|SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ab4001 1Ab4001], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ab4002 1Ab4002], [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1ab4003 1Ab4003]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR002205 Ipr002205], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR005743 Ipr005743], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013758 Ipr013758], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013757 Ipr013757], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013760 Ipr013760], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR006691 Ipr006691]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00521 PF00521]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=43251 d1ab4__]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P0AES4 P0AES4]</span>
+|uPDB=1AB4|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1ab4_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1ab4

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