1bgn

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(New page: 200px<br /><applet load="1bgn" size="450" color="white" frame="true" align="right" spinBox="true" caption="1bgn, resolution 2.0&Aring;" /> '''P-HYDROXYBENZOATE HYD...)
Current revision (11:01, 2 August 2023) (edit) (undo)
 
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[[Image:1bgn.gif|left|200px]]<br /><applet load="1bgn" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1bgn, resolution 2.0&Aring;" />
 
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'''P-HYDROXYBENZOATE HYDROXYLASE (PHBH) MUTANT WITH CYS 116 REPLACED BY SER (C116S) AND ARG 269 REPLACED BY THR (R269T), IN COMPLEX WITH FAD AND 4-HYDROXYBENZOIC ACID'''<br />
 
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==Overview==
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==P-HYDROXYBENZOATE HYDROXYLASE (PHBH) MUTANT WITH CYS 116 REPLACED BY SER (C116S) AND ARG 269 REPLACED BY THR (R269T), IN COMPLEX WITH FAD AND 4-HYDROXYBENZOIC ACID==
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The conserved residues His-162 and Arg-269 of the flavoprotein, p-hydroxybenzoate hydroxylase (EC 1.14.13.2) are located at the entrance, of the interdomain cleft that leads toward the active site. To study their, putative role in NADPH binding, His-162 and Arg-269 were selectively, changed by site-specific mutagenesis. The catalytic properties of H162R, H162Y, and R269K were similar to the wild-type enzyme. However, less, conservative His-162 and Arg-269 replacements strongly impaired NADPH, binding without affecting the conformation of the flavin ring and the, efficiency of substrate hydroxylation. The crystal structures of H162R and, R269T in complex with 4-hydroxybenzoate were solved at 3.0 and 2.0 A, resolution, respectively. Both structures are virtually indistinguishable, from the wild-type enzyme-substrate complex except for the substituted, side chains. In contrast to wild-type p-hydroxybenzoate hydroxylase, H162R, is not inactivated by diethyl pyrocarbonate. NADPH protects wild-type, p-hydroxybenzoate hydroxylase from diethylpyrocarbonate inactivation, suggesting that His-162 is involved in NADPH binding. Based on these, results and GRID calculations we propose that the side chains of His-162, and Arg-269 interact with the pyrophosphate moiety of NADPH. An, interdomain binding mode for NADPH is proposed which takes a novel, sequence motif (Eppink, M. H. M., Schreuder, H. A., and van Berkel, W. J., H. (1997) Protein Sci. 6, 2454-2458) into account.
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<StructureSection load='1bgn' size='340' side='right'caption='[[1bgn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1bgn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BGN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BGN FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=PHB:P-HYDROXYBENZOIC+ACID'>PHB</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bgn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bgn OCA], [https://pdbe.org/1bgn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bgn RCSB], [https://www.ebi.ac.uk/pdbsum/1bgn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bgn ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PHHY_PSEFL PHHY_PSEFL]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bg/1bgn_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bgn ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The conserved residues His-162 and Arg-269 of the flavoprotein p-hydroxybenzoate hydroxylase (EC 1.14.13.2) are located at the entrance of the interdomain cleft that leads toward the active site. To study their putative role in NADPH binding, His-162 and Arg-269 were selectively changed by site-specific mutagenesis. The catalytic properties of H162R, H162Y, and R269K were similar to the wild-type enzyme. However, less conservative His-162 and Arg-269 replacements strongly impaired NADPH binding without affecting the conformation of the flavin ring and the efficiency of substrate hydroxylation. The crystal structures of H162R and R269T in complex with 4-hydroxybenzoate were solved at 3.0 and 2.0 A resolution, respectively. Both structures are virtually indistinguishable from the wild-type enzyme-substrate complex except for the substituted side chains. In contrast to wild-type p-hydroxybenzoate hydroxylase, H162R is not inactivated by diethyl pyrocarbonate. NADPH protects wild-type p-hydroxybenzoate hydroxylase from diethylpyrocarbonate inactivation, suggesting that His-162 is involved in NADPH binding. Based on these results and GRID calculations we propose that the side chains of His-162 and Arg-269 interact with the pyrophosphate moiety of NADPH. An interdomain binding mode for NADPH is proposed which takes a novel sequence motif (Eppink, M. H. M., Schreuder, H. A., and van Berkel, W. J. H. (1997) Protein Sci. 6, 2454-2458) into account.
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==About this Structure==
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Interdomain binding of NADPH in p-hydroxybenzoate hydroxylase as suggested by kinetic, crystallographic and modeling studies of histidine 162 and arginine 269 variants.,Eppink MH, Schreuder HA, van Berkel WJ J Biol Chem. 1998 Aug 14;273(33):21031-9. PMID:9694855<ref>PMID:9694855</ref>
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1BGN is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens] with FAD and PHB as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/4-hydroxybenzoate_3-monooxygenase 4-hydroxybenzoate 3-monooxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.13.2 1.14.13.2] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1BGN OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Interdomain binding of NADPH in p-hydroxybenzoate hydroxylase as suggested by kinetic, crystallographic and modeling studies of histidine 162 and arginine 269 variants., Eppink MH, Schreuder HA, van Berkel WJ, J Biol Chem. 1998 Aug 14;273(33):21031-9. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9694855 9694855]
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</div>
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[[Category: 4-hydroxybenzoate 3-monooxygenase]]
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<div class="pdbe-citations 1bgn" style="background-color:#fffaf0;"></div>
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[[Category: Pseudomonas fluorescens]]
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[[Category: Single protein]]
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[[Category: Berkel, W.J.H.Van.]]
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[[Category: Eppink, M.H.M.]]
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[[Category: Schreuder, H.A.]]
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[[Category: FAD]]
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[[Category: PHB]]
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[[Category: oxidoreductase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:38:29 2007''
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==See Also==
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*[[Hydroxylases 3D structures|Hydroxylases 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Pseudomonas fluorescens]]
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[[Category: Eppink MHM]]
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[[Category: Schreuder HA]]
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[[Category: Van Berkel WJH]]

Current revision

P-HYDROXYBENZOATE HYDROXYLASE (PHBH) MUTANT WITH CYS 116 REPLACED BY SER (C116S) AND ARG 269 REPLACED BY THR (R269T), IN COMPLEX WITH FAD AND 4-HYDROXYBENZOIC ACID

PDB ID 1bgn

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