1bgq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1bgq" size="450" color="white" frame="true" align="right" spinBox="true" caption="1bgq, resolution 2.50&Aring;" /> '''RADICICOL BOUND TO T...)
Current revision (11:01, 2 August 2023) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1bgq.gif|left|200px]]<br /><applet load="1bgq" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1bgq, resolution 2.50&Aring;" />
 
-
'''RADICICOL BOUND TO THE ATP BINDING SITE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE'''<br />
 
-
==Overview==
+
==RADICICOL BOUND TO THE ATP BINDING SITE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE==
-
The cellular activity of several regulatory and signal transduction, proteins, which depend on the Hsp90 molecular chaperone for folding, is, markedly decreased by geldanamycin and by radicicol (monorden). We now, show that these unrelated compounds both bind to the N-terminal, ATP/ADP-binding domain of Hsp90, with radicicol displaying nanomolar, affinity, and both inhibit the inherent ATPase activity of Hsp90 which is, essential for its function in vivo. Crystal structure determinations of, Hsp90 N-terminal domain complexes with geldanamycin and radicicol identify, key aspects of their nucleotide mimicry and suggest a rational basis for, the design of novel antichaperone drugs.
+
<StructureSection load='1bgq' size='340' side='right'caption='[[1bgq]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1bgq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BGQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BGQ FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RDC:RADICICOL'>RDC</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bgq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bgq OCA], [https://pdbe.org/1bgq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bgq RCSB], [https://www.ebi.ac.uk/pdbsum/1bgq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bgq ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HSP82_YEAST HSP82_YEAST] Molecular chaperone that promotes the maturation, structural maintenance and proper regulation of specific target proteins involved in cell cycle control and signal transduction. Undergoes a functional cycle that is linked to its ATPase activity. The nucleotide-free form of the dimer is found in an open conformation in which the N-termini are not dimerized and the complex is ready for client protein binding. Binding of ATP induces large conformational changes, resulting in the formation of a ring-like closed structure in which the N-terminal domains associate intramolecularly with the middle domain and also dimerize with each other, stimulating their intrinsic ATPase activity and acting as a clamp on the substrate. Finally, ATP hydrolysis results in the release of the substrate. This cycle probably induces conformational changes in the client proteins, thereby causing their activation. Interacts dynamically with various co-chaperones that modulate its substrate recognition, ATPase cycle and chaperone function. Required for growth at high temperatures.<ref>PMID:17114002</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bg/1bgq_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bgq ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The cellular activity of several regulatory and signal transduction proteins, which depend on the Hsp90 molecular chaperone for folding, is markedly decreased by geldanamycin and by radicicol (monorden). We now show that these unrelated compounds both bind to the N-terminal ATP/ADP-binding domain of Hsp90, with radicicol displaying nanomolar affinity, and both inhibit the inherent ATPase activity of Hsp90 which is essential for its function in vivo. Crystal structure determinations of Hsp90 N-terminal domain complexes with geldanamycin and radicicol identify key aspects of their nucleotide mimicry and suggest a rational basis for the design of novel antichaperone drugs.
-
==About this Structure==
+
Structural basis for inhibition of the Hsp90 molecular chaperone by the antitumor antibiotics radicicol and geldanamycin.,Roe SM, Prodromou C, O'Brien R, Ladbury JE, Piper PW, Pearl LH J Med Chem. 1999 Jan 28;42(2):260-6. PMID:9925731<ref>PMID:9925731</ref>
-
1BGQ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with RDC as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1BGQ OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Structural basis for inhibition of the Hsp90 molecular chaperone by the antitumor antibiotics radicicol and geldanamycin., Roe SM, Prodromou C, O'Brien R, Ladbury JE, Piper PW, Pearl LH, J Med Chem. 1999 Jan 28;42(2):260-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=9925731 9925731]
+
</div>
-
[[Category: Saccharomyces cerevisiae]]
+
<div class="pdbe-citations 1bgq" style="background-color:#fffaf0;"></div>
-
[[Category: Single protein]]
+
-
[[Category: Pearl, L.H.]]
+
-
[[Category: Prodromou, C.]]
+
-
[[Category: Roe, S.M.]]
+
-
[[Category: RDC]]
+
-
[[Category: atp-binding]]
+
-
[[Category: chaperone]]
+
-
[[Category: heat shock]]
+
-
[[Category: inhibitor]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 11:38:33 2007''
+
==See Also==
 +
*[[Heat Shock Protein structures|Heat Shock Protein structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Saccharomyces cerevisiae]]
 +
[[Category: Pearl LH]]
 +
[[Category: Prodromou C]]
 +
[[Category: Roe SM]]

Current revision

RADICICOL BOUND TO THE ATP BINDING SITE OF THE N-TERMINAL DOMAIN OF THE YEAST HSP90 CHAPERONE

PDB ID 1bgq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools