1bz5

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(New page: 200px<br /><applet load="1bz5" size="450" color="white" frame="true" align="right" spinBox="true" caption="1bz5, resolution 2.58&Aring;" /> '''EVIDENCE OF A COMMON...)
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[[Image:1bz5.jpg|left|200px]]<br /><applet load="1bz5" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1bz5, resolution 2.58&Aring;" />
 
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'''EVIDENCE OF A COMMON DECAMER IN THREE CRYSTAL STRUCTURES OF BPTI, CRYSTALLIZE FROM THIOCYANATE, CHLORIDE OR SULFATE'''<br />
 
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==Overview==
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==EVIDENCE OF A COMMON DECAMER IN THREE CRYSTAL STRUCTURES OF BPTI, CRYSTALLIZE FROM THIOCYANATE, CHLORIDE OR SULFATE==
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Bovine pancreatic trypsin inhibitor (BPTI) crystallizes under acidic pH, conditions in the presence of thiocyanate, chloride and sulfate ions, yielding three different polymorphs in P2(1), P6(4)22 and P6(3)22 space, groups, respectively. In all three crystal forms, the same decamer is, found in the packing (ten BPTI molecules organized through two, perpendicular 2-fold and 5-fold axes as a well-defined and compact object), in contrast to the monomeric crystal forms observed at basic pH, conditions. The crystallization of BPTI under acidic conditions (pH 4.5), was investigated by small angle X-ray scattering with both under- and, supersaturated BPTI solutions. Data showed the oligomerization of BPTI, molecules under all investigated conditions. Accordingly, various mixtures, of discrete oligomers (n=1 to 10) were considered. Calculated scattering, curves were obtained using models based on the crystallographic, structures, and the experimental patterns were analyzed as a linear, combination of the model curves using a non-linear curve fitting, procedure. The results, confirmed by gel filtration experiments, unambiguously demonstrate the co-existence of two different BPTI particles, in solution: a monomer and a decamer, with no evidence of any other, intermediates. Moreover, using both approaches, the fraction of decamers, was found to increase with increasing salt concentration, even beyond the, solubility curve. We therefore propose that at acidic pH, BPTI, crystallizes following a two step process: decamers are first built in, under- and supersaturated solutions, upon which crystal growth proceeds by, decamer stacking. Indeed, those BPTI crystals should best be described as, "BPTI decamer" crystals.
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<StructureSection load='1bz5' size='340' side='right'caption='[[1bz5]], [[Resolution|resolution]] 2.58&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1bz5]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BZ5 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.58&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bz5 OCA], [https://pdbe.org/1bz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bz5 RCSB], [https://www.ebi.ac.uk/pdbsum/1bz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bz5 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/BPT1_BOVIN BPT1_BOVIN] Inhibits trypsin, kallikrein, chymotrypsin, and plasmin.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bz/1bz5_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bz5 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Bovine pancreatic trypsin inhibitor (BPTI) crystallizes under acidic pH conditions in the presence of thiocyanate, chloride and sulfate ions, yielding three different polymorphs in P2(1), P6(4)22 and P6(3)22 space groups, respectively. In all three crystal forms, the same decamer is found in the packing (ten BPTI molecules organized through two perpendicular 2-fold and 5-fold axes as a well-defined and compact object) in contrast to the monomeric crystal forms observed at basic pH conditions. The crystallization of BPTI under acidic conditions (pH 4.5) was investigated by small angle X-ray scattering with both under- and supersaturated BPTI solutions. Data showed the oligomerization of BPTI molecules under all investigated conditions. Accordingly, various mixtures of discrete oligomers (n=1 to 10) were considered. Calculated scattering curves were obtained using models based on the crystallographic structures, and the experimental patterns were analyzed as a linear combination of the model curves using a non-linear curve fitting procedure. The results, confirmed by gel filtration experiments, unambiguously demonstrate the co-existence of two different BPTI particles in solution: a monomer and a decamer, with no evidence of any other intermediates. Moreover, using both approaches, the fraction of decamers was found to increase with increasing salt concentration, even beyond the solubility curve. We therefore propose that at acidic pH, BPTI crystallizes following a two step process: decamers are first built in under- and supersaturated solutions, upon which crystal growth proceeds by decamer stacking. Indeed, those BPTI crystals should best be described as "BPTI decamer" crystals.
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==About this Structure==
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The BPTI decamer observed in acidic pH crystal forms pre-exists as a stable species in solution.,Hamiaux C, Perez J, Prange T, Veesler S, Ries-Kautt M, Vachette P J Mol Biol. 2000 Mar 31;297(3):697-712. PMID:10731422<ref>PMID:10731422</ref>
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1BZ5 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with SO4 as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1BZ5 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The BPTI decamer observed in acidic pH crystal forms pre-exists as a stable species in solution., Hamiaux C, Perez J, Prange T, Veesler S, Ries-Kautt M, Vachette P, J Mol Biol. 2000 Mar 31;297(3):697-712. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10731422 10731422]
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</div>
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[[Category: Bos taurus]]
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<div class="pdbe-citations 1bz5" style="background-color:#fffaf0;"></div>
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[[Category: Single protein]]
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[[Category: Astier, J.P.]]
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[[Category: Ducruix, A.]]
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[[Category: Hamiaux, C.]]
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[[Category: Lafont, S.]]
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[[Category: Prange, T.]]
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[[Category: Ries-Kautt, M.]]
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[[Category: Veesler, S.]]
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[[Category: SO4]]
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[[Category: bovine pancreatic trypsin inhibitor]]
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[[Category: pentameric molecule]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 12:02:19 2007''
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==See Also==
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*[[BPTI 3D structures|BPTI 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Bos taurus]]
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[[Category: Large Structures]]
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[[Category: Astier JP]]
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[[Category: Ducruix A]]
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[[Category: Hamiaux C]]
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[[Category: Lafont S]]
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[[Category: Prange T]]
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[[Category: Ries-Kautt M]]
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[[Category: Veesler S]]

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EVIDENCE OF A COMMON DECAMER IN THREE CRYSTAL STRUCTURES OF BPTI, CRYSTALLIZE FROM THIOCYANATE, CHLORIDE OR SULFATE

PDB ID 1bz5

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