|
|
| (14 intermediate revisions not shown.) |
| Line 1: |
Line 1: |
| - | [[Image:1c2u.gif|left|200px]]<br /><applet load="1c2u" size="450" color="white" frame="true" align="right" spinBox="true" | |
| - | caption="1c2u" /> | |
| - | '''SOLUTION STRUCTURE OF [ABU3,35]SHK12-28,17-32'''<br /> | |
| | | | |
| - | ==Overview== | + | ==SOLUTION STRUCTURE OF [ABU3,35]SHK12-28,17-32== |
| - | ShK toxin, a potassium channel blocker from the sea anemone Stichodactyla, helianthus, is a 35 residue polypeptide cross-linked by three disulfide, bridges: Cys3-Cys35, Cys12-Cys28, and Cys17-Cys32. To investigate the role, of these disulfides in the structure and channel-blocking activity of ShK, toxin, a series of analogues was synthesized by selective replacement of, each pair of half-cystines with two alpha-amino-butyrate (Abu) residues., The remaining two disulfide pairs were formed unambiguously using an, orthogonal protecting group strategy of Cys(Trt) or Cys(Acm) at the, appropriate position. The peptides were tested in vitro for their ability, to block Kv1.1 and Kv1.3 potassium channels and their ability to displace, [(125)I]dendrotoxin binding to rat brain synaptosomal membranes. The, monocyclic peptides showed no activity in these assays. Of the dicyclic, peptides, [Abu12,28]ShK(3-35,17)(-)(32) (where the subscript indicates, disulfide connectivities) had weak activity on Kv1.3 and Kv1.1., [Abu17,32]ShK(3-35,12)(-)(28) blocked Kv1.3 with low nanomolar potency, but was less effective (being comparable to [Abu12,28]ShK(3-35,17)(-)(32)), against Kv1.1. [Abu3, 35]ShK(12-28,17)(-)(32), retained high picomolar, affinity against both channels. Corroborating these results, [Abu3,35]ShK(12-28, 17)(-)(32) had an IC(50) ratio relative to native, toxin of 18 in the displacement assay, whereas, [Abu17,32]ShK(3-35,12)(-)(28) and [Abu12, 28]ShK(3-35,17)(-)(32) had, ratios of 69 and 390, respectively. Thus, the disulfide bond linking the, N- and C-terminal regions is less important for activity than the internal, disulfides. NMR analysis of the [Abu12,28] and [Abu17,32] analogues, indicated that they had little residual structure, consistent with their, significantly reduced activities. By contrast, [Abu3,35]ShK(12-28,17)(-)(32) had a moderately well-defined solution, structure, with a mean pairwise root-mean-square deviation of 1.33 A over, the backbone heavy atoms. This structure nevertheless showed significant, differences from that of native ShK toxin. The possible interactions of, this analogue with the channel and the distinction between native, secondary and tertiary structure on one hand and global topology imposed, by the disulfide bridges on the other are discussed. | + | <StructureSection load='1c2u' size='340' side='right'caption='[[1c2u]]' scene=''> |
| | + | == Structural highlights == |
| | + | <table><tr><td colspan='2'>[[1c2u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Stichodactyla_helianthus Stichodactyla helianthus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C2U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C2U FirstGlance]. <br> |
| | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ABA:ALPHA-AMINOBUTYRIC+ACID'>ABA</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c2u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c2u OCA], [https://pdbe.org/1c2u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c2u RCSB], [https://www.ebi.ac.uk/pdbsum/1c2u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c2u ProSAT]</span></td></tr> |
| | + | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/K1A_STIHL K1A_STIHL] Inhibits voltage-dependent potassium channels. Inhibits Kv1.3/KCNA3 potently and also blocks Kv1.1/KCNA1, Kv1.4/KCNA4, and Kv1.6/KCNA6 at subnanomolar concentrations.<ref>PMID:7660365</ref> |
| | + | <div style="background-color:#fffaf0;"> |
| | + | == Publication Abstract from PubMed == |
| | + | ShK toxin, a potassium channel blocker from the sea anemone Stichodactyla helianthus, is a 35 residue polypeptide cross-linked by three disulfide bridges: Cys3-Cys35, Cys12-Cys28, and Cys17-Cys32. To investigate the role of these disulfides in the structure and channel-blocking activity of ShK toxin, a series of analogues was synthesized by selective replacement of each pair of half-cystines with two alpha-amino-butyrate (Abu) residues. The remaining two disulfide pairs were formed unambiguously using an orthogonal protecting group strategy of Cys(Trt) or Cys(Acm) at the appropriate position. The peptides were tested in vitro for their ability to block Kv1.1 and Kv1.3 potassium channels and their ability to displace [(125)I]dendrotoxin binding to rat brain synaptosomal membranes. The monocyclic peptides showed no activity in these assays. Of the dicyclic peptides, [Abu12,28]ShK(3-35,17)(-)(32) (where the subscript indicates disulfide connectivities) had weak activity on Kv1.3 and Kv1.1. [Abu17,32]ShK(3-35,12)(-)(28) blocked Kv1.3 with low nanomolar potency, but was less effective (being comparable to [Abu12,28]ShK(3-35,17)(-)(32)) against Kv1.1. [Abu3, 35]ShK(12-28,17)(-)(32), retained high picomolar affinity against both channels. Corroborating these results, [Abu3,35]ShK(12-28, 17)(-)(32) had an IC(50) ratio relative to native toxin of 18 in the displacement assay, whereas [Abu17,32]ShK(3-35,12)(-)(28) and [Abu12, 28]ShK(3-35,17)(-)(32) had ratios of 69 and 390, respectively. Thus, the disulfide bond linking the N- and C-terminal regions is less important for activity than the internal disulfides. NMR analysis of the [Abu12,28] and [Abu17,32] analogues indicated that they had little residual structure, consistent with their significantly reduced activities. By contrast, [Abu3,35]ShK(12-28,17)(-)(32) had a moderately well-defined solution structure, with a mean pairwise root-mean-square deviation of 1.33 A over the backbone heavy atoms. This structure nevertheless showed significant differences from that of native ShK toxin. The possible interactions of this analogue with the channel and the distinction between native secondary and tertiary structure on one hand and global topology imposed by the disulfide bridges on the other are discussed. |
| | | | |
| - | ==About this Structure==
| + | Role of disulfide bonds in the structure and potassium channel blocking activity of ShK toxin.,Pennington MW, Lanigan MD, Kalman K, Mahnir VM, Rauer H, McVaugh CT, Behm D, Donaldson D, Chandy KG, Kem WR, Norton RS Biochemistry. 1999 Nov 2;38(44):14549-58. PMID:10545177<ref>PMID:10545177</ref> |
| - | 1C2U is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1C2U OCA].
| + | |
| | | | |
| - | ==Reference==
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> |
| - | Role of disulfide bonds in the structure and potassium channel blocking activity of ShK toxin., Pennington MW, Lanigan MD, Kalman K, Mahnir VM, Rauer H, McVaugh CT, Behm D, Donaldson D, Chandy KG, Kem WR, Norton RS, Biochemistry. 1999 Nov 2;38(44):14549-58. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10545177 10545177]
| + | </div> |
| - | [[Category: Single protein]]
| + | <div class="pdbe-citations 1c2u" style="background-color:#fffaf0;"></div> |
| - | [[Category: Behm, D.]]
| + | |
| - | [[Category: Chandy, K.G.]]
| + | |
| - | [[Category: Donaldson, D.]]
| + | |
| - | [[Category: Kalman, K.]]
| + | |
| - | [[Category: Kem, W.R.]]
| + | |
| - | [[Category: Lanigan, M.D.]]
| + | |
| - | [[Category: Manhir, V.M.]]
| + | |
| - | [[Category: McVaugh, C.T.]]
| + | |
| - | [[Category: Norton, R.S.]]
| + | |
| - | [[Category: Pennington, M.W.]]
| + | |
| - | [[Category: Rauer, H.]]
| + | |
| - | [[Category: analogues]]
| + | |
| - | [[Category: disulphide bonds]]
| + | |
| - | [[Category: nmr]]
| + | |
| - | [[Category: potassium channel]]
| + | |
| - | [[Category: shk toxin]]
| + | |
| - | [[Category: solution structure]]
| + | |
| - | [[Category: structure-function]]
| + | |
| | | | |
| - | ''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 12:07:20 2007''
| + | ==See Also== |
| | + | *[[Potassium channel toxin 3D structures|Potassium channel toxin 3D structures]] |
| | + | == References == |
| | + | <references/> |
| | + | __TOC__ |
| | + | </StructureSection> |
| | + | [[Category: Large Structures]] |
| | + | [[Category: Stichodactyla helianthus]] |
| | + | [[Category: Behm D]] |
| | + | [[Category: Chandy KG]] |
| | + | [[Category: Donaldson D]] |
| | + | [[Category: Kalman K]] |
| | + | [[Category: Kem WR]] |
| | + | [[Category: Lanigan MD]] |
| | + | [[Category: Manhir VM]] |
| | + | [[Category: McVaugh CT]] |
| | + | [[Category: Norton RS]] |
| | + | [[Category: Pennington MW]] |
| | + | [[Category: Rauer H]] |
| Structural highlights
Function
K1A_STIHL Inhibits voltage-dependent potassium channels. Inhibits Kv1.3/KCNA3 potently and also blocks Kv1.1/KCNA1, Kv1.4/KCNA4, and Kv1.6/KCNA6 at subnanomolar concentrations.[1]
Publication Abstract from PubMed
ShK toxin, a potassium channel blocker from the sea anemone Stichodactyla helianthus, is a 35 residue polypeptide cross-linked by three disulfide bridges: Cys3-Cys35, Cys12-Cys28, and Cys17-Cys32. To investigate the role of these disulfides in the structure and channel-blocking activity of ShK toxin, a series of analogues was synthesized by selective replacement of each pair of half-cystines with two alpha-amino-butyrate (Abu) residues. The remaining two disulfide pairs were formed unambiguously using an orthogonal protecting group strategy of Cys(Trt) or Cys(Acm) at the appropriate position. The peptides were tested in vitro for their ability to block Kv1.1 and Kv1.3 potassium channels and their ability to displace [(125)I]dendrotoxin binding to rat brain synaptosomal membranes. The monocyclic peptides showed no activity in these assays. Of the dicyclic peptides, [Abu12,28]ShK(3-35,17)(-)(32) (where the subscript indicates disulfide connectivities) had weak activity on Kv1.3 and Kv1.1. [Abu17,32]ShK(3-35,12)(-)(28) blocked Kv1.3 with low nanomolar potency, but was less effective (being comparable to [Abu12,28]ShK(3-35,17)(-)(32)) against Kv1.1. [Abu3, 35]ShK(12-28,17)(-)(32), retained high picomolar affinity against both channels. Corroborating these results, [Abu3,35]ShK(12-28, 17)(-)(32) had an IC(50) ratio relative to native toxin of 18 in the displacement assay, whereas [Abu17,32]ShK(3-35,12)(-)(28) and [Abu12, 28]ShK(3-35,17)(-)(32) had ratios of 69 and 390, respectively. Thus, the disulfide bond linking the N- and C-terminal regions is less important for activity than the internal disulfides. NMR analysis of the [Abu12,28] and [Abu17,32] analogues indicated that they had little residual structure, consistent with their significantly reduced activities. By contrast, [Abu3,35]ShK(12-28,17)(-)(32) had a moderately well-defined solution structure, with a mean pairwise root-mean-square deviation of 1.33 A over the backbone heavy atoms. This structure nevertheless showed significant differences from that of native ShK toxin. The possible interactions of this analogue with the channel and the distinction between native secondary and tertiary structure on one hand and global topology imposed by the disulfide bridges on the other are discussed.
Role of disulfide bonds in the structure and potassium channel blocking activity of ShK toxin.,Pennington MW, Lanigan MD, Kalman K, Mahnir VM, Rauer H, McVaugh CT, Behm D, Donaldson D, Chandy KG, Kem WR, Norton RS Biochemistry. 1999 Nov 2;38(44):14549-58. PMID:10545177[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Castaneda O, Sotolongo V, Amor AM, Stocklin R, Anderson AJ, Harvey AL, Engstrom A, Wernstedt C, Karlsson E. Characterization of a potassium channel toxin from the Caribbean Sea anemone Stichodactyla helianthus. Toxicon. 1995 May;33(5):603-13. PMID:7660365
- ↑ Pennington MW, Lanigan MD, Kalman K, Mahnir VM, Rauer H, McVaugh CT, Behm D, Donaldson D, Chandy KG, Kem WR, Norton RS. Role of disulfide bonds in the structure and potassium channel blocking activity of ShK toxin. Biochemistry. 1999 Nov 2;38(44):14549-58. PMID:10545177
|