This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1c53

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1c53" size="450" color="white" frame="true" align="right" spinBox="true" caption="1c53, resolution 1.8&Aring;" /> '''S-CLASS CYTOCHROMES C...)
Current revision (06:41, 7 February 2024) (edit) (undo)
 
(17 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1c53.jpg|left|200px]]<br /><applet load="1c53" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1c53, resolution 1.8&Aring;" />
 
-
'''S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD'''<br />
 
-
==Overview==
+
==S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD==
-
The three-dimensional structure of cytochrome c-553 isolated from, sulfate-reducing bacterium, Desulfovibrio vulgaris Miyazaki F strain, has, been determined by the multi-wavelength anomalous dispersion technique, with use of synchrotron radiation. The result shows that bacterial S-class, cytochromes c have a variety of folding patterns. The relative location of, two a-helices at amino- and carboxyl-terminals and the style of bonding to, the heme group show "cytochrome c folding," but other regions of the, structure are different from those of other cytochromes c previously, reported. The results also give useful information about the location of, sulfate-reducing bacterium on the phylogenetic tree of the bacterial, cytochromes c superfamily.
+
<StructureSection load='1c53' size='340' side='right'caption='[[1c53]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1c53]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'Miyazaki_F' Desulfovibrio vulgaris str. 'Miyazaki F']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C53 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C53 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c53 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c53 OCA], [https://pdbe.org/1c53 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c53 RCSB], [https://www.ebi.ac.uk/pdbsum/1c53 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c53 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CY553_DESVM CY553_DESVM] Natural electron acceptor for a formate dehydrogenase.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c5/1c53_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1c53 ConSurf].
 +
<div style="clear:both"></div>
-
==About this Structure==
+
==See Also==
-
1C53 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris] with HEM as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1C53 OCA].
+
*[[Cytochrome C 3D structures|Cytochrome C 3D structures]]
-
 
+
__TOC__
-
==Reference==
+
</StructureSection>
-
S-class cytochromes c have a variety of folding patterns: structure of cytochrome c-553 from Desulfovibrio vulgaris determined by the multi-wavelength anomalous dispersion method., Nakagawa A, Higuchi Y, Yasuoka N, Katsube Y, Yagi T, J Biochem (Tokyo). 1990 Nov;108(5):701-3. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=1964450 1964450]
+
[[Category: Desulfovibrio vulgaris str. 'Miyazaki F']]
-
[[Category: Desulfovibrio vulgaris]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Higuchi Y]]
-
[[Category: Higuchi, Y.]]
+
[[Category: Katsube Y]]
-
[[Category: Katsube, Y.]]
+
[[Category: Nakagawa A]]
-
[[Category: Nakagawa, A.]]
+
[[Category: Yaga T]]
-
[[Category: Yaga, T.]]
+
[[Category: Yasuoka N]]
-
[[Category: Yasuoka, N.]]
+
-
[[Category: HEM]]
+
-
[[Category: electron transport]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 12:09:53 2007''
+

Current revision

S-CLASS CYTOCHROMES C HAVE A VARIETY OF FOLDING PATTERNS: STRUCTURE OF CYTOCHROME C-553 FROM DESULFOVIBRIO VULGARIS DETERMINED BY THE MULTI-WAVELENGTH ANOMALOUS DISPERSION METHOD

PDB ID 1c53

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1c53"
Personal tools