This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3cyn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: '''Unreleased structure''' The entry 3cyn is ON HOLD until Paper Publication Authors: Kavanagh, K.L., Johansson, C., Yue, W.W., Kochan, G., Oppermann, U. Description: The structure of ...)
Current revision (12:35, 30 August 2023) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 3cyn is ON HOLD until Paper Publication
+
==The structure of human GPX8==
 +
<StructureSection load='3cyn' size='340' side='right'caption='[[3cyn]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[3cyn]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CYN FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cyn OCA], [https://pdbe.org/3cyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cyn RCSB], [https://www.ebi.ac.uk/pdbsum/3cyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cyn ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GPX8_HUMAN GPX8_HUMAN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cy/3cyn_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cyn ConSurf].
 +
<div style="clear:both"></div>
-
Authors: Kavanagh, K.L., Johansson, C., Yue, W.W., Kochan, G., Oppermann, U.
+
==See Also==
-
 
+
*[[Glutathione peroxidase|Glutathione peroxidase]]
-
Description: The structure of human GPX8 (CASP Target)
+
__TOC__
-
 
+
</StructureSection>
-
 
+
[[Category: Homo sapiens]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Jun 11 09:35:23 2008''
+
[[Category: Large Structures]]
 +
[[Category: Arrowsmith CH]]
 +
[[Category: Bountra C]]
 +
[[Category: Edwards AM]]
 +
[[Category: Filippakopoulos P]]
 +
[[Category: Johansson C]]
 +
[[Category: Kavanagh KL]]
 +
[[Category: Kochan G]]
 +
[[Category: Murray J]]
 +
[[Category: Oppermann U]]
 +
[[Category: Pike ACW]]
 +
[[Category: Roos AK]]
 +
[[Category: Wikstrom M]]
 +
[[Category: Yue WW]]
 +
[[Category: Von Delft F]]

Current revision

The structure of human GPX8

PDB ID 3cyn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools