This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3d5l
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 3d5l is ON HOLD Authors: Agarwal, R., Burley, S.K., Swaminathan, S., New York Structural GenomiX Research Consortium (NYSGXRC) Description: Crystal...) |
|||
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of regulatory protein RecX== | |
| - | + | <StructureSection load='3d5l' size='340' side='right'caption='[[3d5l]], [[Resolution|resolution]] 2.35Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | + | <table><tr><td colspan='2'>[[3d5l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Limosilactobacillus_reuteri_subsp._rodentium Limosilactobacillus reuteri subsp. rodentium]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3D5L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3D5L FirstGlance]. <br> | |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3d5l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3d5l OCA], [https://pdbe.org/3d5l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3d5l RCSB], [https://www.ebi.ac.uk/pdbsum/3d5l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3d5l ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3d5l TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/B3XNW8_LIMR1 B3XNW8_LIMR1] Modulates RecA activity.[ARBA:ARBA00003529][HAMAP-Rule:MF_01114] | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/3d5l_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3d5l ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Limosilactobacillus reuteri subsp. rodentium]] | ||
| + | [[Category: Agarwal R]] | ||
| + | [[Category: Burley SK]] | ||
| + | [[Category: Swaminathan S]] | ||
Current revision
Crystal structure of regulatory protein RecX
| |||||||||||
