This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.

Template:STRUCTURE 1db1

From Proteopedia

(Difference between revisions)

Jump to: navigation, search

Current revision

1db1, resolution 1.80Å ()

Ligands:

Structural annotation:
Resources:	CATH : 1Db1A00 InterPro : Ipr000324, Ipr001723, Ipr000536, Ipr013088, Ipr001628, Ipr008946 Pfam : PF00104 SCOP : d1db1a_ UniProt : P11473

Functional annotation:
Cellular component:	nucleus
Biological process:	signal transduction intestinal absorption multicellular organismal development organ morphogenesis skeletal development negative regulation of transcription transcription calcium ion transport cellular calcium ion homeostasis regulation of transcription, DNA-dependent
Molecular function:	transcription factor activity receptor activity sequence-specific DNA binding metal ion binding protein binding vitamin D3 receptor activity ligand-dependent nuclear receptor activity transcription regulator activity steroid hormone receptor activity DNA binding zinc ion binding

Evolutionary conservation:

Toggle Conservation Colors:	Rows = identical sequences:
Further Information:	Caveats, Explanation, Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, RCSB, PDBsum

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1db1"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1db1, resolution 1.8&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1db1]], [[Resolution|resolution]] 1.80&Aring; (<scene name='initialview01'>default scene</scene>)}}}
 |LIGAND= <scene name='pdbligand=VDX:5-{2-[1-(5-HYDROXY-1,5-DIMETHYL-HEXYL)-7A-METHYL-OCTAHYDRO-INDEN-4-YLIDENE]-ETHYLIDENE}-4-METHYLENE-CYCLOHEXANE-1,3-DIOL'>VDX</scene>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00104 Hormone_recep]</span>
+|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1db1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1db1 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1db1 RCSB], [http://www.ebi.ac.uk/pdbsum/1db1 PDBsum]</span>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1db1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1db1 OCA], [http://www.ebi.ac.uk/pdbsum/1db1 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1db1 RCSB]</span>
 |FUNCTION={{GO|id=GO:0003700 | text = transcription factor activity}}{{GO|id=GO:0004872 | text = receptor activity}}{{GO|id=GO:0043565 | text = sequence-specific DNA binding}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0008434 | text = vitamin D3 receptor activity}}{{GO|id=GO:0004879 | text = ligand-dependent nuclear receptor activity}}{{GO|id=GO:0030528 | text = transcription regulator activity}}{{GO|id=GO:0003707 | text = steroid hormone receptor activity}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0008270 | text = zinc ion binding}}
 |PROCESS={{GO|id=GO:0007165 | text = signal transduction}}{{GO|id=GO:0050892 | text = intestinal absorption}}{{GO|id=GO:0007275 | text = multicellular organismal development}}{{GO|id=GO:0009887 | text = organ morphogenesis}}{{GO|id=GO:0001501 | text = skeletal development}}{{GO|id=GO:0016481 | text = negative regulation of transcription}}{{GO|id=GO:0006350 | text = transcription}}{{GO|id=GO:0006816 | text = calcium ion transport}}{{GO|id=GO:0006874 | text = cellular calcium ion homeostasis}}{{GO|id=GO:0006355 | text = regulation of transcription, DNA-dependent}}
 |COMPONENT={{GO|id=GO:0005634 | text = nucleus}}
 |SARESOURCES=<span class='plainlinks'>CATH : [http://www.cathdb.info/cgi-bin/cath/Domain.pl?domain_id=1db1A00 1Db1A00]<br>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000324 Ipr000324], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001723 Ipr001723], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000536 Ipr000536], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013088 Ipr013088], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001628 Ipr001628], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR008946 Ipr008946]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00104 PF00104]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=19329 d1db1a_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P11473 P11473]</span>
-|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=P11473 P11473]</span>
+|uPDB=1DB1|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1db1_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1db1

From Proteopedia

Current revision

Proteopedia Page Contributors and Editors (what is this?)

Views

Personal tools

Navigation

Search

Toolbox