1cg0

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(New page: 200px<br /><applet load="1cg0" size="450" color="white" frame="true" align="right" spinBox="true" caption="1cg0, resolution 2.5&Aring;" /> '''STRUCTURE OF ADENYLOS...)
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[[Image:1cg0.jpg|left|200px]]<br /><applet load="1cg0" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1cg0, resolution 2.5&Aring;" />
 
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'''STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH HADACIDIN, GDP, 6-PHOSPHORYL-IMP, AND MG2+'''<br />
 
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==Overview==
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==STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH HADACIDIN, GDP, 6-PHOSPHORYL-IMP, AND MG2+==
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Asp13 and His41 are essential residues of adenylosuccinate synthetase, putatively catalyzing the formation of adenylosuccinate from an, intermediate of 6-phosphoryl-IMP. Wild-type adenylosuccinate synthetase, and three mutant synthetases (Arg143 --&gt; Leu, Lys16 --&gt; Gln, and Arg303, --&gt; Leu) from Eschericha coli have been crystallized in the presence of, IMP, hadacidin (an analogue of L-aspartate), Mg2+, and GTP. The active, site of each complex contains 6-phosphoryl-IMP, Mg2+, GDP, and hadacidin, except for the Arg303 --&gt; Leu mutant, which does not bind hadacidin. In, response to the formation of 6-phosphoryl-IMP, Asp13 enters the inner, coordination sphere of the active site Mg2+. His41 hydrogen bonds with, 6-phosphoryl-IMP, except in the Arg303 --&gt; Leu complex, where it remains, bound to the guanine nucleotide. Hence, recognition of the active site, Mg2+ by Asp13 evidently occurs after the formation of 6-phosphoryl-IMP, but recognition of the intermediate by His41 may require the association, of L-aspartate with the active site. Structures reported here support a, mechanism in which Asp13 and His41 act as the catalytic base and acid, respectively, in the formation of 6-phosphoryl-IMP, and then act together, as catalytic acids in the subsequent formation of adenylosuccinate.
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<StructureSection load='1cg0' size='340' side='right'caption='[[1cg0]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1cg0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CG0 FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene>, <scene name='pdbligand=HDA:HADACIDIN'>HDA</scene>, <scene name='pdbligand=IMO:6-O-PHOSPHORYL+INOSINE+MONOPHOSPHATE'>IMO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cg0 OCA], [https://pdbe.org/1cg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cg0 RCSB], [https://www.ebi.ac.uk/pdbsum/1cg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cg0 ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PURA_ECOLI PURA_ECOLI] Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP (By similarity).[HAMAP-Rule:MF_00011]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cg/1cg0_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cg0 ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Asp13 and His41 are essential residues of adenylosuccinate synthetase, putatively catalyzing the formation of adenylosuccinate from an intermediate of 6-phosphoryl-IMP. Wild-type adenylosuccinate synthetase and three mutant synthetases (Arg143 --&gt; Leu, Lys16 --&gt; Gln, and Arg303 --&gt; Leu) from Eschericha coli have been crystallized in the presence of IMP, hadacidin (an analogue of L-aspartate), Mg2+, and GTP. The active site of each complex contains 6-phosphoryl-IMP, Mg2+, GDP, and hadacidin, except for the Arg303 --&gt; Leu mutant, which does not bind hadacidin. In response to the formation of 6-phosphoryl-IMP, Asp13 enters the inner coordination sphere of the active site Mg2+. His41 hydrogen bonds with 6-phosphoryl-IMP, except in the Arg303 --&gt; Leu complex, where it remains bound to the guanine nucleotide. Hence, recognition of the active site Mg2+ by Asp13 evidently occurs after the formation of 6-phosphoryl-IMP, but recognition of the intermediate by His41 may require the association of L-aspartate with the active site. Structures reported here support a mechanism in which Asp13 and His41 act as the catalytic base and acid, respectively, in the formation of 6-phosphoryl-IMP, and then act together as catalytic acids in the subsequent formation of adenylosuccinate.
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==About this Structure==
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Mechanistic implications from crystalline complexes of wild-type and mutant adenylosuccinate synthetases from Escherichia coli.,Choe JY, Poland BW, Fromm HJ, Honzatko RB Biochemistry. 1999 May 25;38(21):6953-61. PMID:10346917<ref>PMID:10346917</ref>
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1CG0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli] with MG, HDA, IMO and GDP as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Adenylosuccinate_synthase Adenylosuccinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.3.4.4 6.3.4.4] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1CG0 OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Mechanistic implications from crystalline complexes of wild-type and mutant adenylosuccinate synthetases from Escherichia coli., Choe JY, Poland BW, Fromm HJ, Honzatko RB, Biochemistry. 1999 May 25;38(21):6953-61. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10346917 10346917]
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</div>
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[[Category: Adenylosuccinate synthase]]
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<div class="pdbe-citations 1cg0" style="background-color:#fffaf0;"></div>
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[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Choe, J.Y.]]
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[[Category: Fromm, H.]]
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[[Category: Honzatko, R.]]
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[[Category: Poland, B.W.]]
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[[Category: GDP]]
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[[Category: HDA]]
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[[Category: IMO]]
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[[Category: MG]]
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[[Category: 6-phosporyl-imp]]
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[[Category: gtp-hydrolysing enzymes]]
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[[Category: ligase]]
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[[Category: purine 2 nucleotide biosynthesis]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 12:25:22 2007''
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==See Also==
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*[[Adenylosuccinate synthetase 3D structures|Adenylosuccinate synthetase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Escherichia coli K-12]]
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[[Category: Large Structures]]
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[[Category: Choe JY]]
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[[Category: Fromm H]]
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[[Category: Honzatko R]]
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[[Category: Poland BW]]

Current revision

STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM E. COLI COMPLEXED WITH HADACIDIN, GDP, 6-PHOSPHORYL-IMP, AND MG2+

PDB ID 1cg0

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