Template:STRUCTURE 1h2l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:55, 11 March 2013) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
{{StructureD
+
{{Structure
-
|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1h2l, resolution 2.25&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+
|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1h2l]], [[Resolution|resolution]] 2.25&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-
|SITE= <scene name='pdbsite=FE1:So4+Binding+Site+For+Chain+A'>FE1</scene>
+
|LIGAND= <scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
-
|LIGAND= <scene name='pdbligand=AKG:2-OXYGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>
+
|RELATEDENTRY=[[1d7g|1d7g]], [[1h2k|1h2k]], [[1h2m|1h2m]], [[1h2n|1h2n]], [[1l8c|1l8c]], [[1lm8|1lm8]], [[1lqb|1lqb]]
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08007 Cupin_4], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08778 HIF-1a_CTAD]</span>
+
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1h2l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h2l OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1h2l RCSB], [http://www.ebi.ac.uk/pdbsum/1h2l PDBsum]</span>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1h2l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1h2l OCA], [http://www.ebi.ac.uk/pdbsum/1h2l PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1h2l RCSB]</span>
+
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003347 Ipr003347], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013109 Ipr013109], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001321 Ipr001321], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001610 Ipr001610], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013655 Ipr013655], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013767 Ipr013767], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014887 Ipr014887], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001092 Ipr001092], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000014 Ipr000014], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011598 Ipr011598]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF08007 PF08007], [http://pfam.sanger.ac.uk/family?acc=PF08778 PF08778]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=76574 d1h2la_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=76575 d1h2ls_]<br>UniProt : [http://www.uniprot.org/uniprot/Q9NWT6 Q9NWT6], [http://www.uniprot.org/uniprot/Q16665 Q16665]</span>
-
|FUNCTION={{GO|id=GO:0004597 | text = peptide-aspartate beta-dioxygenase activity}}{{GO|id=GO:0005506 | text = iron ion binding}}{{GO|id=GO:0016491 | text = oxidoreductase activity}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0016702 | text = oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen}}{{GO|id=GO:0005515 | text = protein binding}}{{GO|id=GO:0004871 | text = signal transducer activity}}{{GO|id=GO:0030528 | text = transcription regulator activity}}{{GO|id=GO:0003705 | text = RNA polymerase II transcription factor activity, enhancer binding}}{{GO|id=GO:0046982 | text = protein heterodimerization activity}}{{GO|id=GO:0003700 | text = transcription factor activity}}{{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0035035 | text = histone acetyltransferase binding}}
+
|uPDB=1H2L|CONSURF={{!}}-
-
|PROCESS={{GO|id=GO:0006355 | text = regulation of transcription, DNA-dependent}}{{GO|id=GO:0006350 | text = transcription}}{{GO|id=GO:0006950 | text = response to stress}}{{GO|id=GO:0045941 | text = positive regulation of transcription}}{{GO|id=GO:0001666 | text = response to hypoxia}}{{GO|id=GO:0042592 | text = homeostatic process}}{{GO|id=GO:0007165 | text = signal transduction}}{{GO|id=GO:0006351 | text = transcription, DNA-dependent}}{{GO|id=GO:0045449 | text = regulation of transcription}}
+
{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
-
|COMPONENT={{GO|id=GO:0005634 | text = nucleus}}{{GO|id=GO:0005737 | text = cytoplasm}}
+
{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
-
|SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR003347 Ipr003347], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001092 Ipr001092], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001321 Ipr001321], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR001610 Ipr001610], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000014 Ipr000014], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR011598 Ipr011598], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013655 Ipr013655], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR014887 Ipr014887], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR000700 Ipr000700]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF08778 PF08778]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=76574 d1h2la_], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=76575 d1h2ls_]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?Q9NWT6 Q9NWT6], [http://ca.expasy.org/cgi-bin/niceprot.pl?Q16665 Q16665]</span>
+
{{!}} '''Toggle Conservation Colors:'''
-
|FARESOURCES=<span class='plainlinks'>GeneCard : [http://www.genecards.org/cgi-bin/carddisp.pl?id=Q9NWT6 Q9NWT6], [http://www.genecards.org/cgi-bin/carddisp.pl?id=Q16665 Q16665]</span>
+
{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
 +
Rows = identical sequences:
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>A [x]</text>
 +
<name>jmb_1h2l_A</name>
 +
<title>toggle chain A</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
 +
<jmol>
 +
<jmolButton>
 +
<script></script>
 +
<text>S [x]</text>
 +
<name>jmb_1h2l_S</name>
 +
<title>toggle chain S</title>
 +
<jsscript>ConsurfChainButton(elementClicked)</jsscript>
 +
<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
 +
</jmolButton>
 +
</jmol>
 +
 
}}
}}

Current revision

Drag the structure with the mouse to rotate
1h2l, resolution 2.25Å ()
Ligands: , ,
Related: 1d7g, 1h2k, 1h2m, 1h2n, 1l8c, 1lm8, 1lqb
Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1h2l"
Personal tools