This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ci0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1ci0" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ci0, resolution 2.7&Aring;" /> '''PNP OXIDASE FROM SACC...)
Current revision (23:26, 27 December 2023) (edit) (undo)
 
(16 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1ci0.gif|left|200px]]<br /><applet load="1ci0" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1ci0, resolution 2.7&Aring;" />
 
-
'''PNP OXIDASE FROM SACCHAROMYCES CEREVISIAE'''<br />
 
-
==About this Structure==
+
==PNP OXIDASE FROM SACCHAROMYCES CEREVISIAE==
-
1CI0 is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae] with FMN as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/Pyridoxal_5'-phosphate_synthase Pyridoxal 5'-phosphate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.4.3.5 1.4.3.5] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1CI0 OCA].
+
<StructureSection load='1ci0' size='340' side='right'caption='[[1ci0]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
[[Category: Pyridoxal 5'-phosphate synthase]]
+
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1ci0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CI0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CI0 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ci0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ci0 OCA], [https://pdbe.org/1ci0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ci0 RCSB], [https://www.ebi.ac.uk/pdbsum/1ci0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ci0 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1ci0 TOPSAN]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PDX3_YEAST PDX3_YEAST] Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).[HAMAP-Rule:MF_01629]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ci/1ci0_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ci0 ConSurf].
 +
<div style="clear:both"></div>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Single protein]]
+
[[Category: Almo SC]]
-
[[Category: Almo, S.C.]]
+
[[Category: Burley SK]]
-
[[Category: Burley, S.K.]]
+
[[Category: Gerchman SE]]
-
[[Category: Gerchman, S.E.]]
+
[[Category: Graziano V]]
-
[[Category: Graziano, V.]]
+
[[Category: Kycia H]]
-
[[Category: Kycia, H.]]
+
[[Category: Ostrov DA]]
-
[[Category: NYSGXRC, New.York.Structural.GenomiX.Research.Consortium.]]
+
[[Category: Shi W]]
-
[[Category: Ostrov, D.A.]]
+
[[Category: Studier B]]
-
[[Category: Shi, W.]]
+
-
[[Category: Studier, B.]]
+
-
[[Category: FMN]]
+
-
[[Category: b6 metabolism]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: oxidase]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi]]
+
-
[[Category: structural genomics]]
+
-
 
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 12:28:29 2007''
+

Current revision

PNP OXIDASE FROM SACCHAROMYCES CEREVISIAE

PDB ID 1ci0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ci0"
Personal tools