Template:STRUCTURE 1tf6

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(Difference between revisions)

Current revision

Ligands:

Structural annotation:
Resources:	InterPro : Ipr013087, Ipr015880, Ipr007087 Pfam : PF00096 SCOP : d1tf6a5, d1tf6a2, d1tf6a6, d1tf6a3, d1tf6a4, d1tf6a1, d1tf6d5, d1tf6d6, d1tf6d3, d1tf6d4, d1tf6d1, d1tf6d2 UniProt : P03001

Functional annotation:
Cellular component:	intracellular nucleus
Biological process:	transcription regulation of transcription, DNA-dependent
Molecular function:	DNA binding nucleic acid binding metal ion binding RNA binding zinc ion binding

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, RCSB, PDBsum

Coordinates:

save as pdb, mmCIF, xml

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/Template:STRUCTURE_1tf6"

@@ Line 1: / Line 1: @@
-{{StructureD
+{{Structure
-|PDB= {{{PDB}}}|SCENE={{{SCENE}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|1tf6, resolution 3.100&Aring; (<scene name='initialview01'>initial scene</scene>)}}}
+|PDB= {{{PDB}}}|SCENE={{{SCENE|}}}|SIZE={{{SIZE|350}}}|CAPTION={{{CAPTION|[[1tf6]], [[Resolution|resolution]] 3.10&Aring; (<scene name='initialview01'>default scene</scene>)}}}
-|SITE= <scene name='pdbsite=AN1:Zn-Binding+Site'>AN1</scene>, <scene name='pdbsite=AN2:Zn-Binding+Site'>AN2</scene>, <scene name='pdbsite=AN3:Zn-Binding+Site'>AN3</scene>, <scene name='pdbsite=AN4:Zn-Binding+Site'>AN4</scene>, <scene name='pdbsite=AN5:Zn-Binding+Site'>AN5</scene>, <scene name='pdbsite=AN6:Zn-Binding+Site'>AN6</scene>, <scene name='pdbsite=DN1:Zn-Binding+Site'>DN1</scene>, <scene name='pdbsite=DN2:Zn-Binding+Site'>DN2</scene>, <scene name='pdbsite=DN3:Zn-Binding+Site'>DN3</scene>, <scene name='pdbsite=DN4:Zn-Binding+Site'>DN4</scene>, <scene name='pdbsite=DN5:Zn-Binding+Site'>DN5</scene> and <scene name='pdbsite=DN6:Zn-Binding'>DN6</scene>
 |LIGAND= <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
-|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG5048 COG5048]</span>
+|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tf6 OCA], [http://www.rcsb.org/pdb/explore.do?structureId=1tf6 RCSB], [http://www.ebi.ac.uk/pdbsum/1tf6 PDBsum]</span>
-|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1tf6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1tf6 OCA], [http://www.ebi.ac.uk/pdbsum/1tf6 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1tf6 RCSB]</span>
 |FUNCTION={{GO|id=GO:0003677 | text = DNA binding}}{{GO|id=GO:0003676 | text = nucleic acid binding}}{{GO|id=GO:0046872 | text = metal ion binding}}{{GO|id=GO:0003723 | text = RNA binding}}{{GO|id=GO:0008270 | text = zinc ion binding}}
 |PROCESS={{GO|id=GO:0006350 | text = transcription}}{{GO|id=GO:0006355 | text = regulation of transcription, DNA-dependent}}
 |COMPONENT={{GO|id=GO:0005622 | text = intracellular}}{{GO|id=GO:0005634 | text = nucleus}}
 |SARESOURCES=<span class='plainlinks'>InterPro : [http://www.ebi.ac.uk/interpro/ISearch?query=IPR013087 Ipr013087], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR015880 Ipr015880], [http://www.ebi.ac.uk/interpro/ISearch?query=IPR007087 Ipr007087]<br>Pfam : [http://pfam.sanger.ac.uk/family?acc=PF00096 PF00096]<br>SCOP : [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45064 d1tf6a5], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45061 d1tf6a2], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45065 d1tf6a6], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45062 d1tf6a3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45063 d1tf6a4], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45060 d1tf6a1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45070 d1tf6d5], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45071 d1tf6d6], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45068 d1tf6d3], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45069 d1tf6d4], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45066 d1tf6d1], [http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?search_type=SCOP&amp;key=45067 d1tf6d2]<br>UniProt : [http://ca.expasy.org/cgi-bin/niceprot.pl?P03001 P03001]</span>
+|uPDB=1TF6|CONSURF={{!}}-
+{{!}} colspan="2" style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;" {{!}} [[Image:Consurf_key_small.gif|center]]
+{{!}}-{{!}} style="background-color:#bac9f7;color:#040d44;vertical-align:top;text-align:left;"
+{{!}} '''Toggle Conservation Colors:'''
+{{!}} align="left" style="background-color:#acfaac;border-top:2px solid #dddddd; border-right:2px solid #dddddd" {{!}}
+Rows = identical sequences:
+<jmol>
+<jmolButton>
+<script></script>
+<text>B [x]</text>
+<name>jmb_1tf6_B</name>
+<title>toggle chain B</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>E [x]</text>
+<name>jmb_1tf6_E</name>
+<title>toggle chain E</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>C [x]</text>
+<name>jmb_1tf6_C</name>
+<title>toggle chain C</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>F [x]</text>
+<name>jmb_1tf6_F</name>
+<title>toggle chain F</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>A [x]</text>
+<name>jmb_1tf6_A</name>
+<title>toggle chain A</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
+<jmol>
+<jmolButton>
+<script></script>
+<text>D [x]</text>
+<name>jmb_1tf6_D</name>
+<title>toggle chain D</title>
+<jsscript>ConsurfChainButton(elementClicked)</jsscript>
+<appendtargetsuffixtoid>true</appendtargetsuffixtoid>
+</jmolButton>
+</jmol>
 }}

Template:STRUCTURE 1tf6

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