This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


123d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:24, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:123d.png|left|200px]]
 
-
<!--
+
==DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR==
-
The line below this paragraph, containing "STRUCTURE_123d", creates the "Structure Box" on the page.
+
<StructureSection load='123d' size='340' side='right'caption='[[123d]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[123d]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=123D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=123D FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5CM:5-METHYL-2-DEOXY-CYTIDINE-5-MONOPHOSPHATE'>5CM</scene></td></tr>
-
{{STRUCTURE_123d| PDB=123d | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=123d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=123d OCA], [https://pdbe.org/123d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=123d RCSB], [https://www.ebi.ac.uk/pdbsum/123d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=123d ProSAT]</span></td></tr>
-
 
+
</table>
-
===DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR===
+
__TOC__
-
 
+
</StructureSection>
-
 
+
[[Category: Large Structures]]
-
<!--
+
[[Category: Hahn M]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_15299506}}, adds the Publication Abstract to the page
+
[[Category: Heinemann U]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 15299506 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_15299506}}
+
-
 
+
-
==About this Structure==
+
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=123D OCA].
+
-
 
+
-
==Reference==
+
-
DNA helix structure and refinement algorithm: comparison of models for d(CCAGGCm5CTGG) derived from NUCLSQ, TNT and X-PLOR., Hahn M, Heinemann U, Acta Crystallogr D Biol Crystallogr. 1993 Sep 1;49(Pt 5):468-77. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15299506 15299506]
+
-
[[Category: Hahn, M.]]
+
-
[[Category: Heinemann, U.]]
+
-
[[Category: B-dna]]
+
-
[[Category: Double helix]]
+
-
[[Category: Modified]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 15:25:23 2008''
+

Current revision

DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR

PDB ID 123d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools