1a3j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:23, 5 June 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1a3j.png|left|200px]]
 
-
<!--
+
==X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)==
-
The line below this paragraph, containing "STRUCTURE_1a3j", creates the "Structure Box" on the page.
+
<StructureSection load='1a3j' size='340' side='right'caption='[[1a3j]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1a3j]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A3J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1A3J FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1a3j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1a3j OCA], [https://pdbe.org/1a3j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1a3j RCSB], [https://www.ebi.ac.uk/pdbsum/1a3j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1a3j ProSAT]</span></td></tr>
-
{{STRUCTURE_1a3j| PDB=1a3j | SCENE= }}
+
</table>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The crystal structure of the triple-helical peptide (Pro-Pro-Gly)10 has been re-determined to obtain a more accurate description for this widely studied collagen model and to provide a comparison with the recent high-resolution crystal structure of a collagen-like peptide containing Pro-Hyp-Gly regions. This structure demonstrated that hydroxyproline participates extensively in a repetitive hydrogen-bonded assembly between the peptide and the solvent molecules. Two separate structural studies of the peptide (Pro-Pro-Gly)10 were performed with different crystallization conditions, data collection temperatures, and X-ray sources. The polymer-like structure of one triple-helical repeat of Pro-Pro-Gly has been determined to 2.0 A resolution in one case and 1.7 A resolution in the other. The solvent structures of the two peptides were independently determined specifically for validation purposes. The two structures display a reverse chain trace compared with the original structure determination. In comparison with the Hyp-containing peptide, the two Pro-Pro-Gly structures demonstrate very similar molecular conformation and analogous hydration patterns involving carbonyl groups, but have different crystal packing. This difference in crystal packing indicates that the involvement of hydroxyproline in an extended hydration network is critical for the lateral assembly and supermolecular structure of collagen.
-
===X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)===
+
X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly).,Kramer RZ, Vitagliano L, Bella J, Berisio R, Mazzarella L, Brodsky B, Zagari A, Berman HM J Mol Biol. 1998 Jul 24;280(4):623-38. PMID:9677293<ref>PMID:9677293</ref>
-
 
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
<!--
+
</div>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9677293}}, adds the Publication Abstract to the page
+
<div class="pdbe-citations 1a3j" style="background-color:#fffaf0;"></div>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9677293 is the PubMed ID number.
+
== References ==
-
-->
+
<references/>
-
{{ABSTRACT_PUBMED_9677293}}
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
[[Category: Large Structures]]
-
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1A3J OCA].
+
[[Category: Bella J]]
-
 
+
[[Category: Berisio R]]
-
==Reference==
+
[[Category: Berman HM]]
-
X-ray crystallographic determination of a collagen-like peptide with the repeating sequence (Pro-Pro-Gly)., Kramer RZ, Vitagliano L, Bella J, Berisio R, Mazzarella L, Brodsky B, Zagari A, Berman HM, J Mol Biol. 1998 Jul 24;280(4):623-38. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9677293 9677293]
+
[[Category: Brodsky B]]
-
[[Category: Bella, J.]]
+
[[Category: Kramer RZ]]
-
[[Category: Berisio, R.]]
+
[[Category: Mazzarella L]]
-
[[Category: Berman, H M.]]
+
[[Category: Vitagliano L]]
-
[[Category: Brodsky, B.]]
+
[[Category: Zagari A]]
-
[[Category: Kramer, R Z.]]
+
-
[[Category: Mazzarella, L.]]
+
-
[[Category: Vitagliano, L.]]
+
-
[[Category: Zagari, A.]]
+
-
[[Category: Collagen]]
+
-
[[Category: Extracellular matrix]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 15:55:44 2008''
+

Current revision

X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)

PDB ID 1a3j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools