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1dur
From Proteopedia
(Difference between revisions)
(New page: 200px<br /><applet load="1dur" size="450" color="white" frame="true" align="right" spinBox="true" caption="1dur, resolution 2.0Å" /> '''REPLACEMENT FOR 1FDX ...) |
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| - | [[Image:1dur.gif|left|200px]]<br /><applet load="1dur" size="450" color="white" frame="true" align="right" spinBox="true" | ||
| - | caption="1dur, resolution 2.0Å" /> | ||
| - | '''REPLACEMENT FOR 1FDX 2(4FE4S) FERREDOXIN FROM (NOW) PEPTOSTREPTOCOCCUS ASACCHAROLYTICUS'''<br /> | ||
| - | == | + | ==Replacement for 1FDX 2(4FE4S) ferredoxin from (NOW) Peptostreptococcus asaccharolyticus== |
| - | + | <StructureSection load='1dur' size='340' side='right'caption='[[1dur]], [[Resolution|resolution]] 2.00Å' scene=''> | |
| - | [[ | + | == Structural highlights == |
| - | [[ | + | <table><tr><td colspan='2'>[[1dur]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Peptoniphilus_asaccharolyticus Peptoniphilus asaccharolyticus]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1fdx 1fdx]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DUR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DUR FirstGlance]. <br> |
| - | [ | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | [[ | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene></td></tr> |
| - | [[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dur FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dur OCA], [https://pdbe.org/1dur PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dur RCSB], [https://www.ebi.ac.uk/pdbsum/1dur PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dur ProSAT]</span></td></tr> |
| - | [ | + | </table> |
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/FER_PEPAS FER_PEPAS] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | ||
| + | == Evolutionary Conservation == | ||
| + | [[Image:Consurf_key_small.gif|200px|right]] | ||
| + | Check<jmol> | ||
| + | <jmolCheckbox> | ||
| + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/du/1dur_consurf.spt"</scriptWhenChecked> | ||
| + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
| + | <text>to colour the structure by Evolutionary Conservation</text> | ||
| + | </jmolCheckbox> | ||
| + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dur ConSurf]. | ||
| + | <div style="clear:both"></div> | ||
| - | + | ==See Also== | |
| + | *[[Ferredoxin 3D structures|Ferredoxin 3D structures]] | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Peptoniphilus asaccharolyticus]] | ||
| + | [[Category: Adman ET]] | ||
| + | [[Category: Sieker LC]] | ||
Current revision
Replacement for 1FDX 2(4FE4S) ferredoxin from (NOW) Peptostreptococcus asaccharolyticus
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