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1bfd

From Proteopedia

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{{Seed}}
 
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[[Image:1bfd.png|left|200px]]
 
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<!--
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==BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA==
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The line below this paragraph, containing "STRUCTURE_1bfd", creates the "Structure Box" on the page.
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<StructureSection load='1bfd' size='340' side='right'caption='[[1bfd]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1bfd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BFD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BFD FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
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{{STRUCTURE_1bfd| PDB=1bfd | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bfd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bfd OCA], [https://pdbe.org/1bfd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bfd RCSB], [https://www.ebi.ac.uk/pdbsum/1bfd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bfd ProSAT]</span></td></tr>
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</table>
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===BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA===
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== Function ==
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[https://www.uniprot.org/uniprot/MDLC_PSEPU MDLC_PSEPU]
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== Evolutionary Conservation ==
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<!--
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[[Image:Consurf_key_small.gif|200px|right]]
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The line below this paragraph, {{ABSTRACT_PUBMED_9665697}}, adds the Publication Abstract to the page
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Check<jmol>
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(as it appears on PubMed at http://www.pubmed.gov), where 9665697 is the PubMed ID number.
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/bf/1bfd_consurf.spt"</scriptWhenChecked>
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{{ABSTRACT_PUBMED_9665697}}
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1BFD is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida Pseudomonas putida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BFD OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1bfd ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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The crystal structure of benzoylformate decarboxylase at 1.6 A resolution: diversity of catalytic residues in thiamin diphosphate-dependent enzymes., Hasson MS, Muscate A, McLeish MJ, Polovnikova LS, Gerlt JA, Kenyon GL, Petsko GA, Ringe D, Biochemistry. 1998 Jul 14;37(28):9918-30. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9665697 9665697]
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</StructureSection>
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[[Category: Benzoylformate decarboxylase]]
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[[Category: Large Structures]]
[[Category: Pseudomonas putida]]
[[Category: Pseudomonas putida]]
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[[Category: Single protein]]
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[[Category: Gerlt JA]]
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[[Category: Gerlt, J A.]]
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[[Category: Hasson MS]]
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[[Category: Hasson, M S.]]
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[[Category: Kenyon GL]]
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[[Category: Kenyon, G L.]]
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[[Category: Mcleish MJ]]
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[[Category: Mcleish, M J.]]
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[[Category: Muscate A]]
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[[Category: Muscate, A.]]
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[[Category: Petsko GA]]
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[[Category: Petsko, G A.]]
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[[Category: Polovnikova LS]]
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[[Category: Polovnikova, L S.]]
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[[Category: Ringe D]]
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[[Category: Ringe, D.]]
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[[Category: Carbon-carbon]]
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[[Category: Decarboxylase]]
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[[Category: Lyase]]
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[[Category: Mandelate catabolism]]
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[[Category: Thiamin diphosphate]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 19:02:05 2008''
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Current revision

BENZOYLFORMATE DECARBOXYLASE FROM PSEUDOMONAS PUTIDA

PDB ID 1bfd

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