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1ejg

From Proteopedia

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(New page: 200px<br /><applet load="1ejg" size="450" color="white" frame="true" align="right" spinBox="true" caption="1ejg, resolution 0.54&Aring;" /> '''CRAMBIN AT ULTRA-HIG...)
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[[Image:1ejg.gif|left|200px]]<br /><applet load="1ejg" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1ejg, resolution 0.54&Aring;" />
 
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'''CRAMBIN AT ULTRA-HIGH RESOLUTION: VALENCE ELECTRON DENSITY.'''<br />
 
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==Overview==
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==CRAMBIN AT ULTRA-HIGH RESOLUTION: VALENCE ELECTRON DENSITY.==
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The charge density distribution of a protein has been refined, experimentally. Diffraction data for a crambin crystal were measured to, ultra-high resolution (0.54 A) at low temperature by using, short-wavelength synchrotron radiation. The crystal structure was refined, with a model for charged, nonspherical, multipolar atoms to accurately, describe the molecular electron density distribution. The refined, parameters agree within 25% with our transferable electron density library, derived from accurate single crystal diffraction analyses of several amino, acids and small peptides. The resulting electron density maps of, redistributed valence electrons (deformation maps) compare quantitatively, well with a high-level quantum mechanical calculation performed on a, monopeptide. This study provides validation for experimentally derived, parameters and a window into charge density analysis of biological, macromolecules.
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<StructureSection load='1ejg' size='340' side='right'caption='[[1ejg]], [[Resolution|resolution]] 0.54&Aring;' scene=''>
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== Structural highlights ==
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==About this Structure==
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<table><tr><td colspan='2'>[[1ejg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Crambe_hispanica_subsp._abyssinica Crambe hispanica subsp. abyssinica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EJG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EJG FirstGlance]. <br>
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1EJG is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Crambe_hispanica_subsp._abyssinica Crambe hispanica subsp. abyssinica]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1EJG OCA].
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 0.54&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ejg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ejg OCA], [https://pdbe.org/1ejg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ejg RCSB], [https://www.ebi.ac.uk/pdbsum/1ejg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ejg ProSAT]</span></td></tr>
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==Reference==
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</table>
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Accurate protein crystallography at ultra-high resolution: valence electron distribution in crambin., Jelsch C, Teeter MM, Lamzin V, Pichon-Pesme V, Blessing RH, Lecomte C, Proc Natl Acad Sci U S A. 2000 Mar 28;97(7):3171-6. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10737790 10737790]
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== Function ==
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[https://www.uniprot.org/uniprot/CRAM_CRAAB CRAM_CRAAB] The function of this hydrophobic plant seed protein is not known.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ej/1ejg_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ejg ConSurf].
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<div style="clear:both"></div>
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__TOC__
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</StructureSection>
[[Category: Crambe hispanica subsp. abyssinica]]
[[Category: Crambe hispanica subsp. abyssinica]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Blessing, B.]]
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[[Category: Blessing B]]
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[[Category: Jelsch, C.]]
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[[Category: Jelsch C]]
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[[Category: Lamzin, V.]]
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[[Category: Lamzin V]]
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[[Category: Lecomte, C.]]
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[[Category: Lecomte C]]
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[[Category: Pichon-Lesme, V.]]
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[[Category: Pichon-Lesme V]]
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[[Category: Teeter, M.M.]]
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[[Category: Teeter MM]]
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[[Category: multi-substate]]
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[[Category: multipole refinement]]
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[[Category: valence electron density]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 14:03:20 2007''
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Current revision

CRAMBIN AT ULTRA-HIGH RESOLUTION: VALENCE ELECTRON DENSITY.

PDB ID 1ejg

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