1c2u

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{{Seed}}
 
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[[Image:1c2u.png|left|200px]]
 
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==SOLUTION STRUCTURE OF [ABU3,35]SHK12-28,17-32==
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The line below this paragraph, containing "STRUCTURE_1c2u", creates the "Structure Box" on the page.
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<StructureSection load='1c2u' size='340' side='right'caption='[[1c2u]]' scene=''>
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1c2u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Stichodactyla_helianthus Stichodactyla helianthus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C2U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1C2U FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ABA:ALPHA-AMINOBUTYRIC+ACID'>ABA</scene></td></tr>
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{{STRUCTURE_1c2u| PDB=1c2u | SCENE= }}
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1c2u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1c2u OCA], [https://pdbe.org/1c2u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1c2u RCSB], [https://www.ebi.ac.uk/pdbsum/1c2u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1c2u ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/K1A_STIHL K1A_STIHL] Inhibits voltage-dependent potassium channels. Inhibits Kv1.3/KCNA3 potently and also blocks Kv1.1/KCNA1, Kv1.4/KCNA4, and Kv1.6/KCNA6 at subnanomolar concentrations.<ref>PMID:7660365</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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ShK toxin, a potassium channel blocker from the sea anemone Stichodactyla helianthus, is a 35 residue polypeptide cross-linked by three disulfide bridges: Cys3-Cys35, Cys12-Cys28, and Cys17-Cys32. To investigate the role of these disulfides in the structure and channel-blocking activity of ShK toxin, a series of analogues was synthesized by selective replacement of each pair of half-cystines with two alpha-amino-butyrate (Abu) residues. The remaining two disulfide pairs were formed unambiguously using an orthogonal protecting group strategy of Cys(Trt) or Cys(Acm) at the appropriate position. The peptides were tested in vitro for their ability to block Kv1.1 and Kv1.3 potassium channels and their ability to displace [(125)I]dendrotoxin binding to rat brain synaptosomal membranes. The monocyclic peptides showed no activity in these assays. Of the dicyclic peptides, [Abu12,28]ShK(3-35,17)(-)(32) (where the subscript indicates disulfide connectivities) had weak activity on Kv1.3 and Kv1.1. [Abu17,32]ShK(3-35,12)(-)(28) blocked Kv1.3 with low nanomolar potency, but was less effective (being comparable to [Abu12,28]ShK(3-35,17)(-)(32)) against Kv1.1. [Abu3, 35]ShK(12-28,17)(-)(32), retained high picomolar affinity against both channels. Corroborating these results, [Abu3,35]ShK(12-28, 17)(-)(32) had an IC(50) ratio relative to native toxin of 18 in the displacement assay, whereas [Abu17,32]ShK(3-35,12)(-)(28) and [Abu12, 28]ShK(3-35,17)(-)(32) had ratios of 69 and 390, respectively. Thus, the disulfide bond linking the N- and C-terminal regions is less important for activity than the internal disulfides. NMR analysis of the [Abu12,28] and [Abu17,32] analogues indicated that they had little residual structure, consistent with their significantly reduced activities. By contrast, [Abu3,35]ShK(12-28,17)(-)(32) had a moderately well-defined solution structure, with a mean pairwise root-mean-square deviation of 1.33 A over the backbone heavy atoms. This structure nevertheless showed significant differences from that of native ShK toxin. The possible interactions of this analogue with the channel and the distinction between native secondary and tertiary structure on one hand and global topology imposed by the disulfide bridges on the other are discussed.
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===SOLUTION STRUCTURE OF [ABU3,35]SHK12-28,17-32===
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Role of disulfide bonds in the structure and potassium channel blocking activity of ShK toxin.,Pennington MW, Lanigan MD, Kalman K, Mahnir VM, Rauer H, McVaugh CT, Behm D, Donaldson D, Chandy KG, Kem WR, Norton RS Biochemistry. 1999 Nov 2;38(44):14549-58. PMID:10545177<ref>PMID:10545177</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 1c2u" style="background-color:#fffaf0;"></div>
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==See Also==
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The line below this paragraph, {{ABSTRACT_PUBMED_10545177}}, adds the Publication Abstract to the page
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*[[Potassium channel toxin 3D structures|Potassium channel toxin 3D structures]]
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(as it appears on PubMed at http://www.pubmed.gov), where 10545177 is the PubMed ID number.
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== References ==
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<references/>
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{{ABSTRACT_PUBMED_10545177}}
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__TOC__
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</StructureSection>
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==About this Structure==
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[[Category: Large Structures]]
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1C2U is a [[Single protein]] structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1C2U OCA].
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[[Category: Stichodactyla helianthus]]
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[[Category: Behm D]]
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==Reference==
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[[Category: Chandy KG]]
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Role of disulfide bonds in the structure and potassium channel blocking activity of ShK toxin., Pennington MW, Lanigan MD, Kalman K, Mahnir VM, Rauer H, McVaugh CT, Behm D, Donaldson D, Chandy KG, Kem WR, Norton RS, Biochemistry. 1999 Nov 2;38(44):14549-58. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10545177 10545177]
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[[Category: Donaldson D]]
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[[Category: Single protein]]
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[[Category: Kalman K]]
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[[Category: Behm, D.]]
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[[Category: Kem WR]]
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[[Category: Chandy, K G.]]
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[[Category: Lanigan MD]]
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[[Category: Donaldson, D.]]
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[[Category: Manhir VM]]
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[[Category: Kalman, K.]]
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[[Category: McVaugh CT]]
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[[Category: Kem, W R.]]
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[[Category: Norton RS]]
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[[Category: Lanigan, M D.]]
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[[Category: Pennington MW]]
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[[Category: Manhir, V M.]]
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[[Category: Rauer H]]
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[[Category: McVaugh, C T.]]
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[[Category: Norton, R S.]]
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[[Category: Pennington, M W.]]
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[[Category: Rauer, H.]]
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[[Category: Analogue]]
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[[Category: Disulphide bond]]
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[[Category: Nmr]]
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[[Category: Potassium channel]]
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[[Category: Shk toxin]]
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[[Category: Solution structure]]
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[[Category: Structure-function]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 20:08:02 2008''
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SOLUTION STRUCTURE OF [ABU3,35]SHK12-28,17-32

PDB ID 1c2u

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