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1cfe

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{{Seed}}
 
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[[Image:1cfe.png|left|200px]]
 
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<!--
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==P14A, NMR, 20 STRUCTURES==
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The line below this paragraph, containing "STRUCTURE_1cfe", creates the "Structure Box" on the page.
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<StructureSection load='1cfe' size='340' side='right'caption='[[1cfe]]' scene=''>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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== Structural highlights ==
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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<table><tr><td colspan='2'>[[1cfe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CFE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CFE FirstGlance]. <br>
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or leave the SCENE parameter empty for the default display.
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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-->
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cfe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cfe OCA], [https://pdbe.org/1cfe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cfe RCSB], [https://www.ebi.ac.uk/pdbsum/1cfe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cfe ProSAT]</span></td></tr>
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{{STRUCTURE_1cfe| PDB=1cfe | SCENE= }}
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</table>
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== Function ==
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===P14A, NMR, 20 STRUCTURES===
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[https://www.uniprot.org/uniprot/PR06_SOLLC PR06_SOLLC] Probably involved in the defense reaction of plants against pathogens. Has antifungal activity.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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<!--
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Check<jmol>
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The line below this paragraph, {{ABSTRACT_PUBMED_9067611}}, adds the Publication Abstract to the page
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<jmolCheckbox>
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(as it appears on PubMed at http://www.pubmed.gov), where 9067611 is the PubMed ID number.
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cf/1cfe_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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{{ABSTRACT_PUBMED_9067611}}
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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==About this Structure==
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1cfe ConSurf].
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1CFE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CFE OCA].
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<div style="clear:both"></div>
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__TOC__
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==Reference==
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</StructureSection>
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NMR solution structure of the pathogenesis-related protein P14a., Fernandez C, Szyperski T, Bruyere T, Ramage P, Mosinger E, Wuthrich K, J Mol Biol. 1997 Feb 28;266(3):576-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9067611 9067611]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Solanum lycopersicum]]
[[Category: Solanum lycopersicum]]
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[[Category: Bruyere, T.]]
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[[Category: Bruyere T]]
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[[Category: Fernandez, C.]]
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[[Category: Fernandez C]]
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[[Category: Mosinger, E.]]
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[[Category: Mosinger E]]
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[[Category: Ramage, P.]]
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[[Category: Ramage P]]
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[[Category: Szyperski, T.]]
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[[Category: Szyperski T]]
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[[Category: Wuthrich, K.]]
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[[Category: Wuthrich K]]
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[[Category: Pathogenesis-related protein]]
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[[Category: Plant defense]]
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[[Category: Pr-1 protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 20:40:32 2008''
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Current revision

P14A, NMR, 20 STRUCTURES

PDB ID 1cfe

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