This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1d7k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:47, 13 March 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1d7k.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE AT 2.1 ANGSTROMS RESOLUTION==
-
The line below this paragraph, containing "STRUCTURE_1d7k", creates the "Structure Box" on the page.
+
<StructureSection load='1d7k' size='340' side='right'caption='[[1d7k]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1d7k]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D7K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1D7K FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
-
{{STRUCTURE_1d7k| PDB=1d7k | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1d7k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1d7k OCA], [https://pdbe.org/1d7k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1d7k RCSB], [https://www.ebi.ac.uk/pdbsum/1d7k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1d7k ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DCOR_HUMAN DCOR_HUMAN]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d7/1d7k_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1d7k ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE AT 2.1 ANGSTROMS RESOLUTION===
+
==See Also==
-
 
+
*[[Ornithine decarboxylase|Ornithine decarboxylase]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10623504}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 10623504 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10623504}}
+
-
 
+
-
==About this Structure==
+
-
1D7K is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1D7K OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of human ornithine decarboxylase at 2.1 A resolution: structural insights to antizyme binding., Almrud JJ, Oliveira MA, Kern AD, Grishin NV, Phillips MA, Hackert ML, J Mol Biol. 2000 Jan 7;295(1):7-16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10623504 10623504]
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Ornithine decarboxylase]]
+
[[Category: Large Structures]]
-
[[Category: Single protein]]
+
[[Category: Almrud JJ]]
-
[[Category: Almrud, J J.]]
+
[[Category: Grishin NV]]
-
[[Category: Grishin, N V.]]
+
[[Category: Hackert ML]]
-
[[Category: Hackert, M L.]]
+
[[Category: Kern AD]]
-
[[Category: Kern, A D.]]
+
[[Category: Oliveira MA]]
-
[[Category: Oliveira, M A.]]
+
[[Category: Phillips MA]]
-
[[Category: Phillips, M A.]]
+
-
[[Category: Alpha-beta barrel]]
+
-
[[Category: Decarboxylation]]
+
-
[[Category: Ornithine]]
+
-
[[Category: Pyridoxal 5'-phosphate]]
+
-
[[Category: Sheet-domain]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 22:37:33 2008''
+

Current revision

CRYSTAL STRUCTURE OF HUMAN ORNITHINE DECARBOXYLASE AT 2.1 ANGSTROMS RESOLUTION

PDB ID 1d7k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools