This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1dix

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:50, 20 March 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1dix.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF RNASE LE==
-
The line below this paragraph, containing "STRUCTURE_1dix", creates the "Structure Box" on the page.
+
<StructureSection load='1dix' size='340' side='right'caption='[[1dix]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dix]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DIX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DIX FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dix FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dix OCA], [https://pdbe.org/1dix PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dix RCSB], [https://www.ebi.ac.uk/pdbsum/1dix PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dix ProSAT]</span></td></tr>
-
{{STRUCTURE_1dix| PDB=1dix | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RNLE_SOLLC RNLE_SOLLC] Probably involved in plant phosphate-starvation rescue system.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/di/1dix_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dix ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF RNASE LE===
+
==See Also==
-
 
+
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10801354}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 10801354 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10801354}}
+
-
 
+
-
==About this Structure==
+
-
1DIX is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Solanum_lycopersicum Solanum lycopersicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DIX OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structure of a plant ribonuclease, RNase LE., Tanaka N, Arai J, Inokuchi N, Koyama T, Ohgi K, Irie M, Nakamura KT, J Mol Biol. 2000 May 19;298(5):859-73. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10801354 10801354]
+
-
[[Category: Single protein]]
+
[[Category: Solanum lycopersicum]]
[[Category: Solanum lycopersicum]]
-
[[Category: Nakamura, K T.]]
+
[[Category: Nakamura KT]]
-
[[Category: Tanaka, N.]]
+
[[Category: Tanaka N]]
-
[[Category: Alpha plus beta]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:08:11 2008''
+

Current revision

CRYSTAL STRUCTURE OF RNASE LE

PDB ID 1dix

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dix"
Personal tools