1dqw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:58, 7 February 2024) (edit) (undo)
 
(9 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1dqw.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE==
-
The line below this paragraph, containing "STRUCTURE_1dqw", creates the "Structure Box" on the page.
+
<StructureSection load='1dqw' size='340' side='right'caption='[[1dqw]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dqw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DQW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DQW FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dqw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dqw OCA], [https://pdbe.org/1dqw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dqw RCSB], [https://www.ebi.ac.uk/pdbsum/1dqw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dqw ProSAT]</span></td></tr>
-
{{STRUCTURE_1dqw| PDB=1dqw | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/PYRF_YEAST PYRF_YEAST]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dq/1dqw_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dqw ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE===
+
==See Also==
-
 
+
*[[Uridine 5'-monophosphate synthase 3D structures|Uridine 5'-monophosphate synthase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10681417}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 10681417 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10681417}}
+
-
 
+
-
==About this Structure==
+
-
1DQW is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DQW OCA].
+
-
 
+
-
==Reference==
+
-
Anatomy of a proficient enzyme: the structure of orotidine 5'-monophosphate decarboxylase in the presence and absence of a potential transition state analog., Miller BG, Hassell AM, Wolfenden R, Milburn MV, Short SA, Proc Natl Acad Sci U S A. 2000 Feb 29;97(5):2011-6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10681417 10681417]
+
-
[[Category: Orotidine-5'-phosphate decarboxylase]]
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Single protein]]
+
[[Category: Hassell AM]]
-
[[Category: Hassell, A M.]]
+
[[Category: Milburn MV]]
-
[[Category: Milburn, M V.]]
+
[[Category: Miller BG]]
-
[[Category: Miller, B G.]]
+
[[Category: Short SA]]
-
[[Category: Short, S A.]]
+
[[Category: Wolfenden R]]
-
[[Category: Wolfenden, R.]]
+
-
[[Category: Decarboxylase]]
+
-
[[Category: Orotidine 5'-phosphate]]
+
-
[[Category: Tim barrel]]
+
-
[[Category: Uridine 5'-phosphate]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:29:09 2008''
+

Current revision

CRYSTAL STRUCTURE OF OROTIDINE 5'-PHOSPHATE DECARBOXYLASE

PDB ID 1dqw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools