1dse

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:58, 7 February 2024) (edit) (undo)
 
(13 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1dse.png|left|200px]]
 
-
<!--
+
==CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, WITH PHOSPHATE BOUND, PH 6, 100K==
-
The line below this paragraph, containing "STRUCTURE_1dse", creates the "Structure Box" on the page.
+
<StructureSection load='1dse' size='340' side='right'caption='[[1dse]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1dse]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DSE FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_1dse| PDB=1dse | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dse FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dse OCA], [https://pdbe.org/1dse PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dse RCSB], [https://www.ebi.ac.uk/pdbsum/1dse PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dse ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CCPR_YEAST CCPR_YEAST] Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ds/1dse_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1dse ConSurf].
 +
<div style="clear:both"></div>
-
===CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, WITH PHOSPHATE BOUND, PH 6, 100K===
+
==See Also==
-
 
+
*[[Cytochrome c peroxidase 3D structures|Cytochrome c peroxidase 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_11170452}}, adds the Publication Abstract to the page
+
[[Category: Large Structures]]
-
(as it appears on PubMed at http://www.pubmed.gov), where 11170452 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_11170452}}
+
-
 
+
-
==About this Structure==
+
-
1DSE is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DSE OCA].
+
-
 
+
-
==Reference==
+
-
Replacement of the axial histidine ligand with imidazole in cytochrome c peroxidase. 1. Effects on structure., Hirst J, Wilcox SK, Williams PA, Blankenship J, McRee DE, Goodin DB, Biochemistry. 2001 Feb 6;40(5):1265-73. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/11170452 11170452]
+
-
[[Category: Cytochrome-c peroxidase]]
+
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Single protein]]
+
[[Category: Goodin DB]]
-
[[Category: Goodin, D B.]]
+
[[Category: Hirst J]]
-
[[Category: Hirst, J.]]
+
[[Category: McRee DE]]
-
[[Category: McRee, D E.]]
+
[[Category: Wilcox SK]]
-
[[Category: Wilcox, S K.]]
+
[[Category: Williams PA]]
-
[[Category: Williams, P A.]]
+
-
[[Category: Cavity mutant]]
+
-
[[Category: Heme enzyme]]
+
-
[[Category: Ligand binding]]
+
-
[[Category: Peroxidase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Jun 30 23:32:45 2008''
+

Current revision

CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, WITH PHOSPHATE BOUND, PH 6, 100K

PDB ID 1dse

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dse"
Personal tools