1f5a

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(New page: 200px<br /><applet load="1f5a" size="450" color="white" frame="true" align="right" spinBox="true" caption="1f5a, resolution 2.5&Aring;" /> '''CRYSTAL STRUCTURE OF ...)
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[[Image:1f5a.jpg|left|200px]]<br /><applet load="1f5a" size="450" color="white" frame="true" align="right" spinBox="true"
 
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caption="1f5a, resolution 2.5&Aring;" />
 
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'''CRYSTAL STRUCTURE OF MAMMALIAN POLY(A) POLYMERASE'''<br />
 
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==Overview==
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==CRYSTAL STRUCTURE OF MAMMALIAN POLY(A) POLYMERASE==
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In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the, initiation step of protein synthesis, as well as in the export and, stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the, polyadenylation machinery, is a template-independent RNA polymerase which, specifically incorporates ATP at the 3' end of mRNA. We have solved the, crystal structure of bovine poly(A) polymerase bound to an ATP analog at, 2.5 A resolution. The structure revealed expected and unexpected, similarities to other proteins. As expected, the catalytic domain of, poly(A) polymerase shares substantial structural homology with other, nucleotidyl transferases such as DNA polymerase beta and kanamycin, transferase. The C-terminal domain unexpectedly folds into a compact, domain reminiscent of the RNA-recognition motif fold. The three invariant, aspartates of the catalytic triad ligate two of the three active site, metals. One of these metals also contacts the adenine ring. Furthermore, conserved, catalytically important residues contact the nucleotide. These, contacts, taken together with metal coordination of the adenine base, provide a structural basis for ATP selection by poly(A) polymerase.
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<StructureSection load='1f5a' size='340' side='right'caption='[[1f5a]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[1f5a]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. The October 2008 RCSB PDB [https://pdb.rcsb.org/pdb/static.do?p=education_discussion/molecule_of_the_month/index.html Molecule of the Month] feature on ''Poly(A) Polymerase'' by David Goodsell is [https://dx.doi.org/10.2210/rcsb_pdb/mom_2008_10 10.2210/rcsb_pdb/mom_2008_10]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1F5A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1F5A FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3AT:3-DEOXYADENOSINE-5-TRIPHOSPHATE'>3AT</scene>, <scene name='pdbligand=3PO:TRIPHOSPHATE'>3PO</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1f5a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1f5a OCA], [https://pdbe.org/1f5a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1f5a RCSB], [https://www.ebi.ac.uk/pdbsum/1f5a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1f5a ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/PAPOA_BOVIN PAPOA_BOVIN] Polymerase that creates the 3'-poly(A) tail of mRNA's. Also required for the endoribonucleolytic cleavage reaction at some polyadenylation sites. May acquire specificity through interaction with a cleavage and polyadenylation specificity factor (CPSF) at its C-terminus.<ref>PMID:9463383</ref>
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/f5/1f5a_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1f5a ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs. Poly(A) polymerase, the enzyme at the heart of the polyadenylation machinery, is a template-independent RNA polymerase which specifically incorporates ATP at the 3' end of mRNA. We have solved the crystal structure of bovine poly(A) polymerase bound to an ATP analog at 2.5 A resolution. The structure revealed expected and unexpected similarities to other proteins. As expected, the catalytic domain of poly(A) polymerase shares substantial structural homology with other nucleotidyl transferases such as DNA polymerase beta and kanamycin transferase. The C-terminal domain unexpectedly folds into a compact domain reminiscent of the RNA-recognition motif fold. The three invariant aspartates of the catalytic triad ligate two of the three active site metals. One of these metals also contacts the adenine ring. Furthermore, conserved, catalytically important residues contact the nucleotide. These contacts, taken together with metal coordination of the adenine base, provide a structural basis for ATP selection by poly(A) polymerase.
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==About this Structure==
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Crystal structure of mammalian poly(A) polymerase in complex with an analog of ATP.,Martin G, Keller W, Doublie S EMBO J. 2000 Aug 15;19(16):4193-203. PMID:10944102<ref>PMID:10944102</ref>
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1F5A is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus] with MN, 3AT and 3PO as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/Polynucleotide_adenylyltransferase Polynucleotide adenylyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.19 2.7.7.19] Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1F5A OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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Crystal structure of mammalian poly(A) polymerase in complex with an analog of ATP., Martin G, Keller W, Doublie S, EMBO J. 2000 Aug 15;19(16):4193-203. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10944102 10944102]
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</div>
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[[Category: Bos taurus]]
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<div class="pdbe-citations 1f5a" style="background-color:#fffaf0;"></div>
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[[Category: Polynucleotide adenylyltransferase]]
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[[Category: Single protein]]
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[[Category: Doublie, S.]]
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[[Category: Keller, W.]]
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[[Category: Martin, G.]]
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[[Category: 3AT]]
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[[Category: 3PO]]
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[[Category: MN]]
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[[Category: alternative splicing helical turn motif]]
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[[Category: mrna processing]]
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[[Category: nuclear protein]]
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[[Category: nucleotidyl transferase catalytic domain]]
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[[Category: phosphorylation]]
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[[Category: rna-binding]]
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[[Category: transcription]]
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[[Category: transferase]]
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''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 14:37:55 2007''
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==See Also==
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*[[Poly(A) polymerase 3D structures|Poly(A) polymerase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Bos taurus]]
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[[Category: Large Structures]]
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[[Category: RCSB PDB Molecule of the Month]]
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[[Category: Doublie S]]
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[[Category: Keller W]]
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[[Category: Martin G]]

Current revision

CRYSTAL STRUCTURE OF MAMMALIAN POLY(A) POLYMERASE

PDB ID 1f5a

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