This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ef2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:01, 20 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1ef2.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF MANGANESE-SUBSTITUTED KLEBSIELLA AEROGENES UREASE==
-
The line below this paragraph, containing "STRUCTURE_1ef2", creates the "Structure Box" on the page.
+
<StructureSection load='1ef2' size='340' side='right'caption='[[1ef2]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1ef2]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EF2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EF2 FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=KCX:LYSINE+NZ-CARBOXYLIC+ACID'>KCX</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
{{STRUCTURE_1ef2| PDB=1ef2 | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ef2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ef2 OCA], [https://pdbe.org/1ef2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ef2 RCSB], [https://www.ebi.ac.uk/pdbsum/1ef2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ef2 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/URE1_KLEAE URE1_KLEAE]
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ef/1ef2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ef2 ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF MANGANESE-SUBSTITUTED KLEBSIELLA AEROGENES UREASE===
+
==See Also==
-
 
+
*[[Urease 3D structures|Urease 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_10555581}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 10555581 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10555581}}
+
-
 
+
-
==About this Structure==
+
-
1EF2 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Klebsiella_aerogenes Klebsiella aerogenes]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EF2 OCA].
+
-
 
+
-
==Reference==
+
-
Characterization of metal-substituted Klebsiella aerogenes urease., Yamaguchi K, Cosper NJ, Stalhandske C, Scott RA, Pearson MA, Karplus PA, Hausinger RP, J Biol Inorg Chem. 1999 Aug;4(4):468-77. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10555581 10555581]
+
[[Category: Klebsiella aerogenes]]
[[Category: Klebsiella aerogenes]]
-
[[Category: Protein complex]]
+
[[Category: Large Structures]]
-
[[Category: Urease]]
+
[[Category: Cosper NJ]]
-
[[Category: Cosper, N J.]]
+
[[Category: Hausinger RP]]
-
[[Category: Hausinger, R P.]]
+
[[Category: Karplus PA]]
-
[[Category: Karplus, P A.]]
+
[[Category: Pearson MA]]
-
[[Category: Pearson, M A.]]
+
[[Category: Scott RA]]
-
[[Category: Scott, R A.]]
+
[[Category: Stalhandske C]]
-
[[Category: Stalhandske, C.]]
+
[[Category: Yamaguchi K]]
-
[[Category: Yamaguchi, K.]]
+
-
[[Category: Alpha-beta barrel]]
+
-
[[Category: Metalloenzyme]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 00:35:54 2008''
+

Current revision

CRYSTAL STRUCTURE OF MANGANESE-SUBSTITUTED KLEBSIELLA AEROGENES UREASE

PDB ID 1ef2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1ef2"
Personal tools