This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1eia

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:02, 20 March 2024) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1eia.png|left|200px]]
 
-
<!--
+
==X-RAY CRYSTAL STRUCTURE OF EQUINE INFECTIOUS ANEMIA VIRUS (EIAV) CAPSID PROTEIN P26==
-
The line below this paragraph, containing "STRUCTURE_1eia", creates the "Structure Box" on the page.
+
<StructureSection load='1eia' size='340' side='right'caption='[[1eia]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1eia]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EIA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EIA FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
-->
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1eia FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1eia OCA], [https://pdbe.org/1eia PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1eia RCSB], [https://www.ebi.ac.uk/pdbsum/1eia PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1eia ProSAT]</span></td></tr>
-
{{STRUCTURE_1eia| PDB=1eia | SCENE= }}
+
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/GAG_EIAVY GAG_EIAVY] Matrix protein p15 forms the outer shell of the core of the virus, lining the inner surface of the viral membrane (By similarity). Capsid protein p26 forms the conical core of the virus that encapsulates the genomic RNA-nucleocapsid complex (By similarity). Nucleocapsid protein p11 encapsulates and protects viral dimeric unspliced (genomic) RNA. Binds these RNAs through its zinc fingers (By similarity). p9 plays a role in budding of the assembled particle by interacting with PDCD6IP/AIP1 (By similarity).
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ei/1eia_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1eia ConSurf].
 +
<div style="clear:both"></div>
-
===X-RAY CRYSTAL STRUCTURE OF EQUINE INFECTIOUS ANEMIA VIRUS (EIAV) CAPSID PROTEIN P26===
+
==See Also==
-
 
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
-
 
+
__TOC__
-
<!--
+
</StructureSection>
-
The line below this paragraph, {{ABSTRACT_PUBMED_9931251}}, adds the Publication Abstract to the page
+
-
(as it appears on PubMed at http://www.pubmed.gov), where 9931251 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_9931251}}
+
-
 
+
-
==About this Structure==
+
-
1EIA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Equine_infectious_anemia_virus Equine infectious anemia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EIA OCA].
+
-
 
+
-
==Reference==
+
-
Model for lentivirus capsid core assembly based on crystal dimers of EIAV p26., Jin Z, Jin L, Peterson DL, Lawson CL, J Mol Biol. 1999 Feb 12;286(1):83-93. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9931251 9931251]
+
[[Category: Equine infectious anemia virus]]
[[Category: Equine infectious anemia virus]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Jin, L.]]
+
[[Category: Jin L]]
-
[[Category: Jin, Z.]]
+
[[Category: Jin Z]]
-
[[Category: Lawson, C L.]]
+
[[Category: Lawson CL]]
-
[[Category: Peterson, D L.]]
+
[[Category: Peterson DL]]
-
[[Category: Crystal structure]]
+
-
[[Category: Eiav]]
+
-
[[Category: Hiv]]
+
-
[[Category: Lentivirus]]
+
-
[[Category: Viral capsid]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 00:44:38 2008''
+

Current revision

X-RAY CRYSTAL STRUCTURE OF EQUINE INFECTIOUS ANEMIA VIRUS (EIAV) CAPSID PROTEIN P26

PDB ID 1eia

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1eia"
Personal tools