1emv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:04, 7 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1emv.png|left|200px]]
 
-
<!--
+
==CRYSTAL STRUCTURE OF COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9 (1.7 ANGSTROMS)==
-
The line below this paragraph, containing "STRUCTURE_1emv", creates the "Structure Box" on the page.
+
<StructureSection load='1emv' size='340' side='right'caption='[[1emv]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1emv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EMV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EMV FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
{{STRUCTURE_1emv| PDB=1emv | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1emv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1emv OCA], [https://pdbe.org/1emv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1emv RCSB], [https://www.ebi.ac.uk/pdbsum/1emv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1emv ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/IMM9_ECOLX IMM9_ECOLX] This protein is able to protect a cell, which harbors the plasmid ColE9 encoding colicin E9, against colicin E9, it binds specifically to the DNase-type colicin and inhibits its bactericidal activity.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/em/1emv_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1emv ConSurf].
 +
<div style="clear:both"></div>
-
===CRYSTAL STRUCTURE OF COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9 (1.7 ANGSTROMS)===
+
==See Also==
-
 
+
*[[Colicin 3D structures|Colicin 3D structures]]
-
 
+
*[[Colicin immunity protein 3D structures|Colicin immunity protein 3D structures]]
-
<!--
+
__TOC__
-
The line below this paragraph, {{ABSTRACT_PUBMED_10966813}}, adds the Publication Abstract to the page
+
</StructureSection>
-
(as it appears on PubMed at http://www.pubmed.gov), where 10966813 is the PubMed ID number.
+
-
-->
+
-
{{ABSTRACT_PUBMED_10966813}}
+
-
 
+
-
==About this Structure==
+
-
1EMV is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EMV OCA].
+
-
 
+
-
==Reference==
+
-
Specificity in protein-protein interactions: the structural basis for dual recognition in endonuclease colicin-immunity protein complexes., Kuhlmann UC, Pommer AJ, Moore GR, James R, Kleanthous C, J Mol Biol. 2000 Sep 1;301(5):1163-78. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10966813 10966813]
+
-
[[Category: Deoxyribonuclease I]]
+
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
-
[[Category: Protein complex]]
+
[[Category: Large Structures]]
-
[[Category: James, R.]]
+
[[Category: James R]]
-
[[Category: Kleanthous, C.]]
+
[[Category: Kleanthous C]]
-
[[Category: Kuhlmann, U C.]]
+
[[Category: Kuhlmann UC]]
-
[[Category: Moore, G M.]]
+
[[Category: Moore GM]]
-
[[Category: Pommer, A J.]]
+
[[Category: Pommer AJ]]
-
[[Category: Protein-protein complex]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 01:00:13 2008''
+

Current revision

CRYSTAL STRUCTURE OF COLICIN E9 DNASE DOMAIN WITH ITS COGNATE IMMUNITY PROTEIN IM9 (1.7 ANGSTROMS)

PDB ID 1emv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools