1fg2

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
(New page: 200px<br /><applet load="1fg2" size="450" color="white" frame="true" align="right" spinBox="true" caption="1fg2, resolution 2.754&Aring;" /> '''CRYSTAL STRUCTURE O...)
Current revision (06:37, 30 October 2024) (edit) (undo)
 
(18 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:1fg2.gif|left|200px]]<br /><applet load="1fg2" size="450" color="white" frame="true" align="right" spinBox="true"
 
-
caption="1fg2, resolution 2.754&Aring;" />
 
-
'''CRYSTAL STRUCTURE OF THE LCMV PEPTIDIC EPITOPE GP33 IN COMPLEX WITH THE MURINE CLASS I MHC MOLECULE H-2DB'''<br />
 
-
==Overview==
+
==CRYSTAL STRUCTURE OF THE LCMV PEPTIDIC EPITOPE GP33 IN COMPLEX WITH THE MURINE CLASS I MHC MOLECULE H-2DB==
-
Viral escape, first characterized for the lymphocytic choriomeningitis, virus (LCMV) in a mouse transgenic for the P14 T cell-receptor (TCR), can, be due to mutations in T-cell epitopes. We have measured the affinity, between the H-2D(b) containing the wild-type and two of its "viral escape", epitopes, as well as other altered peptide ligands (APL), by using BIACORE, analysis, and solved the crystal structure of H-2D(b) in complex with the, wild-type peptide at 2.75 A resolution. We show that viral escape is due, to a 50 to 100-fold reduction in the level of affinity between the P14 TCR, and the binary complexes of the MHC molecule with the different peptides., Structurally, one of the mutations alters a TCR contact residue, while the, effect of the other on the binding of the TCR must be indirect through, structural rearrangements. The former is a null ligand, while the latter, still leads to some central tolerance. This work defines the structural, and energetic threshold for viral escape.
+
<StructureSection load='1fg2' size='340' side='right'caption='[[1fg2]], [[Resolution|resolution]] 2.75&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[1fg2]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FG2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FG2 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.754&#8491;</td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fg2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fg2 OCA], [https://pdbe.org/1fg2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fg2 RCSB], [https://www.ebi.ac.uk/pdbsum/1fg2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fg2 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/HA11_MOUSE HA11_MOUSE] Involved in the presentation of foreign antigens to the immune system.
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fg/1fg2_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fg2 ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Viral escape, first characterized for the lymphocytic choriomeningitis virus (LCMV) in a mouse transgenic for the P14 T cell-receptor (TCR), can be due to mutations in T-cell epitopes. We have measured the affinity between the H-2D(b) containing the wild-type and two of its "viral escape" epitopes, as well as other altered peptide ligands (APL), by using BIACORE analysis, and solved the crystal structure of H-2D(b) in complex with the wild-type peptide at 2.75 A resolution. We show that viral escape is due to a 50 to 100-fold reduction in the level of affinity between the P14 TCR and the binary complexes of the MHC molecule with the different peptides. Structurally, one of the mutations alters a TCR contact residue, while the effect of the other on the binding of the TCR must be indirect through structural rearrangements. The former is a null ligand, while the latter still leads to some central tolerance. This work defines the structural and energetic threshold for viral escape.
-
==About this Structure==
+
Viral escape at the molecular level explained by quantitative T-cell receptor/peptide/MHC interactions and the crystal structure of a peptide/MHC complex.,Tissot AC, Ciatto C, Mittl PR, Grutter MG, Pluckthun A J Mol Biol. 2000 Sep 29;302(4):873-85. PMID:10993729<ref>PMID:10993729</ref>
-
1FG2 is a [http://en.wikipedia.org/wiki/Protein_complex Protein complex] structure of sequences from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://ispc.weizmann.ac.il/oca-bin/ocashort?id=1FG2 OCA].
+
-
==Reference==
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
Viral escape at the molecular level explained by quantitative T-cell receptor/peptide/MHC interactions and the crystal structure of a peptide/MHC complex., Tissot AC, Ciatto C, Mittl PR, Grutter MG, Pluckthun A, J Mol Biol. 2000 Sep 29;302(4):873-85. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=10993729 10993729]
+
</div>
-
[[Category: Mus musculus]]
+
<div class="pdbe-citations 1fg2" style="background-color:#fffaf0;"></div>
-
[[Category: Protein complex]]
+
-
[[Category: Ciatto, C.]]
+
-
[[Category: Gruetter, M.G.]]
+
-
[[Category: Mittl, P.R.E.]]
+
-
[[Category: Plueckthun, A.]]
+
-
[[Category: Tissot, A.C.]]
+
-
[[Category: ig fold]]
+
-
''Page seeded by [http://ispc.weizmann.ac.il/oca OCA ] on Tue Nov 20 14:53:58 2007''
+
==See Also==
 +
*[[Beta-2 microglobulin 3D structures|Beta-2 microglobulin 3D structures]]
 +
*[[MHC 3D structures|MHC 3D structures]]
 +
*[[MHC I 3D structures|MHC I 3D structures]]
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Mus musculus]]
 +
[[Category: Ciatto C]]
 +
[[Category: Gruetter MG]]
 +
[[Category: Mittl PRE]]
 +
[[Category: Plueckthun A]]
 +
[[Category: Tissot AC]]

Current revision

CRYSTAL STRUCTURE OF THE LCMV PEPTIDIC EPITOPE GP33 IN COMPLEX WITH THE MURINE CLASS I MHC MOLECULE H-2DB

PDB ID 1fg2

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1fg2"
Personal tools