This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1exf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:08, 7 February 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Seed}}
 
-
[[Image:1exf.png|left|200px]]
 
-
<!--
+
==EXFOLIATIVE TOXIN A==
-
The line below this paragraph, containing "STRUCTURE_1exf", creates the "Structure Box" on the page.
+
<StructureSection load='1exf' size='340' side='right'caption='[[1exf]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
-
You may change the PDB parameter (which sets the PDB file loaded into the applet)
+
== Structural highlights ==
-
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
+
<table><tr><td colspan='2'>[[1exf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1EXF FirstGlance]. <br>
-
or leave the SCENE parameter empty for the default display.
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
-->
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GLY:GLYCINE'>GLY</scene></td></tr>
-
{{STRUCTURE_1exf| PDB=1exf | SCENE= }}
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1exf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1exf OCA], [https://pdbe.org/1exf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1exf RCSB], [https://www.ebi.ac.uk/pdbsum/1exf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1exf ProSAT]</span></td></tr>
-
 
+
</table>
-
===EXFOLIATIVE TOXIN A===
+
== Function ==
-
 
+
[https://www.uniprot.org/uniprot/ETA_STAAU ETA_STAAU] Has serine protease-like properties and binds to the skin protein profilaggrin. Cleaves substrates after acidic residues. Exfoliative toxins cause impetigous diseases commonly referred as staphylococcal scalded skin syndrome (SSSS).<ref>PMID:2117445</ref> <ref>PMID:2384148</ref>
-
 
+
== Evolutionary Conservation ==
-
<!--
+
[[Image:Consurf_key_small.gif|200px|right]]
-
The line below this paragraph, {{ABSTRACT_PUBMED_9048539}}, adds the Publication Abstract to the page
+
Check<jmol>
-
(as it appears on PubMed at http://www.pubmed.gov), where 9048539 is the PubMed ID number.
+
<jmolCheckbox>
-
-->
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/1exf_consurf.spt"</scriptWhenChecked>
-
{{ABSTRACT_PUBMED_9048539}}
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
1EXF is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus] and [http://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1EXF OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1exf ConSurf].
-
 
+
<div style="clear:both"></div>
-
==Reference==
+
== References ==
-
The structure of the superantigen exfoliative toxin A suggests a novel regulation as a serine protease., Vath GM, Earhart CA, Rago JV, Kim MH, Bohach GA, Schlievert PM, Ohlendorf DH, Biochemistry. 1997 Feb 18;36(7):1559-66. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/9048539 9048539]
+
<references/>
-
[[Category: Single protein]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Staphylococcus aureus]]
[[Category: Staphylococcus aureus]]
-
[[Category: Unidentified]]
+
[[Category: Bohach GA]]
-
[[Category: Bohach, G A.]]
+
[[Category: Earhart CA]]
-
[[Category: Earhart, C A.]]
+
[[Category: Kim MH]]
-
[[Category: Kim, M H.]]
+
[[Category: Ohlendorf DH]]
-
[[Category: Ohlendorf, D H.]]
+
[[Category: Rago JV]]
-
[[Category: Rago, J V.]]
+
[[Category: Schlievert PM]]
-
[[Category: Schlievert, P M.]]
+
[[Category: Vath GM]]
-
[[Category: Vath, G M.]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Serine protease]]
+
-
[[Category: Superantigen]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Tue Jul 1 02:10:05 2008''
+

Current revision

EXFOLIATIVE TOXIN A

PDB ID 1exf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools